Primary Citation PubMed: 2665808
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Insight into G-DNA structural polymorphism and folding from sequence and loop connectivity through free energy analysis.
(2011) J Am Chem Soc 133
PubMed: 21761922 | PubMedCentral: PMC3168932 | DOI: 10.1021/ja107805r
The loop of the T 2 - P 3 a model was mutated from the second loop of the 1XAV structure; the loop of T 2 - P 2 a model was mutated from the second loop of the 1L34 structure; and the T 2 - P 4 p mode... was obtained by removing the third loop residue of the T 3 - P 4 p model.
( 56 ) Methods Starting Structures All of the L n , L w , D , and P 3 a models were built from the NMR structure 2GKU ;( 56 ) the P 2 a models were built from the 1L34 structure;( 57 ) the P 4 a stems were built from the crystal structure 1JPQ with two loop K + ions removed from the initial structure;( 58 ) and the stem structures of the P 3 p / P 4 p models were obtained from the first three/four G-quartets of the 139D structure, respectively.
Publication Year: 2011
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