Citations in PubMed

Primary Citation PubMed: 12112683 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 2

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Genome-wide analysis of eukaryote thaumatin-like proteins (TLPs) with an emphasis on poplar.

(2011) BMC Plant Biol 11

PubMed: 21324123 | PubMedCentral: PMC3048497 | DOI: 10.1186/1471-2229-11-33

By contrast, although the REDDD amino acids are conserved in most sTLPs, AM-3D of several sTLP sequences with the recently solved structure of wheat TLX1 (PDB: 1KWN ) revealed neither an acidic cleft ... or any particular conserved region which could be linked to the reported xylanase inhibitor function (Figuer 6 , [ 12 ]).

Publication Year: 2011

Bulk-solvent and overall scaling revisited: faster calculations, improved results.

(2013) Acta Crystallogr D Biol Crystallogr 69

PubMed: 23519671 | PubMedCentral: PMC3606040 | DOI: 10.1107/S0907444913000462

For example, considering k isotropic to be a single-value scalar the pair ( k mask , k isotropic ) that minimizes the R factor in the low-resolution range of PDB data set 1kwn is (0.2913, 0.0961), whi... e the pair (0.3218, 0.0863) minimizes the LS function.

Figure 5 Plots of R factors (with k isotropic = 0.0961) and the LS function (with k isotropic = 0.0863) for PDB entry 1kwn (left) and R factors (with k isotropic = 0.0131) and the LS function (with k isotropic = 0.0151) for PDB entry 1hqw (right), illustrating that the minima of the R -factor function (46) and the LS function (22) can be at significantly different locations in parameter space.

Table 1 Comparison of binning schemes performed with d −3 and ln( d ) spacing for three selected PDB data sets: 1kwn , 3hay and 3gk8 All three data sets have very low completeness in the lowest resolution bin, which d −3 binning obscures while ln( d ) binning makes clear even when using approximately half the number of bins.

Table 1 ▶ compares binning performed uniformly in d −3 and in ln( d ) spacing for three data sets (PDB entries 3hay , 1kwn and 3gk8 ).

  1kwn 3hay 3gk8 Bin No.

Publication Year: 2013