Primary Citation PubMed: 9108091
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Structural Aspects of Drug Resistance and Inhibition of HIV-1 Reverse Transcriptase.
(2010) Viruses 2
PubMed: 20376302 | PubMedCentral: PMC2850067 | DOI: 10.3390/v2020606
Clockwise from top left: RT/Etravirine (PDB Code 1sv5), RT/nevirapine (1vrt), RT/delavirdine (1klm), and RT/efavirenz (1ikw).
Publication Year: 2010
Automated identification of protein-ligand interaction features using Inductive Logic Programming: a hexose binding case study.
(2012) BMC Bioinformatics 13
PubMed: 22783946 | PubMedCentral: PMC3458898 | DOI: 10.1186/1471-2105-13-162
Table 3 Non-binding sites negative dataset, composed of random surface pockets that do not bind any ligand PDB ID Cavity center PDB ID Cavity center PDB ID Cavity center 1A04 1424, 2671 1A0I 1689, 799... 1A22 2927 1AA7 579 1AF7 631, 1492 1AM2 1277 1ARO 154, 1663 1ATG 1751 1C3G 630, 888 1C3P 1089, 1576 1DXJ 867, 1498 1EVT 2149, 2229 1FI2 1493 1KLM 4373, 4113 1KWP 1212 1QZ7 3592, 2509 1YQZ 4458, 4269 1YVB 1546, 1814 1ZT9 1056, 1188 2A1K 2758, 3345 2AUP 2246 2BG9 14076, 8076 2C9Q 777 2CL3 123, 948 2DN2 749, 1006 2F1K 316, 642 2G50 26265, 31672 2G69 248, 378 2GRK 369, 380 2GSE 337, 10618 2GSH 6260 The table lists the protein’s PDB ID and the specified cavity center, computed as the centroid of the reported PDB atom numbers.
Publication Year: 2012
2D, 3D-QSAR and docking studies of 1,2,3-thiadiazole thioacetanilides analogues as potent HIV-1 non-nucleoside reverse transcriptase inhibitors.
(2012) Org Med Chem Lett 2
PubMed: 22691718 | PubMedCentral: PMC3495901 | DOI: 10.1186/2191-2858-2-22
Fine 3D structure with a resolution of 2.65 Å of NNRT was retrieved from the Protein Data Bank ( PDB ID: 1KLM ).
( a ) Compounds 7c4 interacting with NNRT receptor protein of PDB 1KLM .
( b ) Compounds 7c5 interacting with NNRT receptor protein of PDB 1KLM .
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