Citations in PubMed

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PDB ID Mentions in PubMed Central Article count: 1

Citations in PubMed

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PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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OptMAVEn--a new framework for the de novo design of antibody variable region models targeting specific antigen epitopes.

(2014) PLoS One 9

PubMed: 25153121 | PubMedCentral: PMC4143332 | DOI: 10.1371/journal.pone.0105954

Peptide Protein PDB RMSD PDB RMSD PDB RMSD PDB RMSD 1ACY 1.79 2G5B 1.86 1BJ1 2.11 3DVG 2.71 1CE1 2.35 2H1P 2.98 1DZB 1.35 3E8U 2.40 1CFS 2.41 2HFG 2.50 1EGJ 3.74 3ETB 2.35 1CFT 1.93 2HH0 2.30 1FBI 2.7... 3G6D 3.23 1CU4 1.99 2HKF 2.17 1I9R 2.48 3IU3 2.67 1E4W 2.35 2HRP 1.69 1JHL 1.55 3KS0 2.31 1EJO 1.47 2IGF 2.48 1JRH 4.68 3L5W 1.80 1F90 1.69 2J4W 1.83 1KIQ 1.86 3L5Y 1.96 1FPT 1.61 2OQJ 2.62 1MLC 3.42 3LQA 3.88 1GGI 2.43 2OR9 1.79 1NSN 2.12 3NFP 3.09 1HH6 2.02 2OSL 2.85 1OAZ 2.28 3NH7 2.96 1HIN 1.86 2QHR 2.77 1ORS 3.23 3O0R 4.05 1I8I 1.89 2QSC 2.79 1RJL 1.84 3P30 3.79 1JP5 1.86 2R0W 2.02 1TQB 2.23 3QWO 1.97 1KC5 2.06 2ZPK 2.19 1TZH 3.89 3RKD 3.24 1KCR 3.08 3BAE 1.75 1TZI 3.88 1KTR 2.13 3BKY 2.61 1V7M 2.82 1MVU 1.28 3CVH 3.13 1W72 2.69 1N64 1.55 3CXD 2.56 1XIW 2.10 1NAK 2.57 3EYU 2.42 1ZTX 1.96 1OBE 4.05 3F58 2.50 2BDN 1.77 1P4B 2.70 3FFD 2.78 2DQJ 2.03 1PZ5 2.31 3FN0 2.64 2FJH 3.75 1QKZ 2.03 3G5V 1.75 2HVK 1.44 1QNZ 2.27 3GGW 2.24 2IFF 3.52 1SM3 2.36 3GHB 1.92 2JEL 2.74 1TET 2.56 3GHE 1.56 2QR0 4.28 1TZG 1.69 3GJG 2.91 2R29 2.28 1U8J 2.17 3HR5 2.27 2VWE 4.30 1UWX 1.74 3MLR 2.16 2VXQ 1.88 1XGY 2.05 3MLS 1.88 2VXS 3.52 2A6I 2.33 3MLW 2.37 2ZUQ 2.49 2B1H 2.14 3MLX 2.08 3AB0 2.36 2CK0 2.82 3MLY 2.48 3BDY 2.94 2EH8 2.35 3QG6 2.48 3D85 2.63 Average Std Min Max Medium Accepted Failure Peptide 2.25 0.47 1.28 4.05 30% 69% 1% Protein 2.75 0.84 1.35 4.68 20% 72% 8% Four representative positioning successes of PDB 1MVU, 1NQZ, 1DZB and 2FEL with RMSDs of 1.28, 2.27, 1.35 and 2.74 Å, respectively, are illustrated in Figure 3 .

Publication Year: 2014