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PDB ID Mentions in PubMed Central Article count: 1

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PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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"Hot cores" in proteins: comparative analysis of the apolar contact area in structures from hyper/thermophilic and mesophilic organisms.

(2008) BMC Struct Biol 8

PubMed: 18312638 | PubMedCentral: PMC2294123 | DOI: 10.1186/1472-6807-8-14

2.00 0.20 59 Oxidoreductase Superoxide Dismutase 31 1SRV A a/b Thermus thermophilus 1.70 1KID 0 a/b Escherichia coli 1.70 0.00 69 Chaperone Groel 32 1UZB A a/b Thermus thermophilus 1.40 1O0A A a/b Hal... bacterium salinarum 1.42 0.02 34 Oxidoreductase 1-Pyrroline-5-Carboxylate Dehydrogenase 33 1V6S A a/b Thermus thermophilus 1.50 16PK 0 a/b Trypanosoma brucei 1.60 0.10 43 Transferase Phosphoglycerate Kinase 34 1V8F A a/b Thermus thermophilus 1.90 1N2E A a/b M. tuberculosis 1.60 0.30 55 Ligase Pantothenate Synthetase 35 1VC4 A a/b Thermus thermophilus 1.80 1PII 0 a/b Escherichia coli 2.00 0.20 37 Lyase Indole-3-Glycerolphosphate Synthase 36 1VCD A a/b Thermus thermophilus 1.70 1SJY A a/b Deinococcus radiodurans 1.39 0.31 34 Hydrolase Ap6a Hydroxylase Ndx1 37 1YYA A a/b Thermus thermophilus 1.60 1MO0 A a/b Caenorhabditis elegans 1.70 0.10 44 Isomerase Triosephosphate Isomerase 38 2PRD 0 a/b Thermus thermophilus 2.00 1SXV A a/b M. tuberculosis 1.30 0.70 51 Hydrolase Inorganic Pyrophosphatase * Optimal growth temperatures are between 50°C and 80°C for thermophiles, and above 80°C for hyperthermophiles Table 2 Hyperthermophilic/Mesophilic (1–38) and Thermophilic/Mesophilic (39–59) pairs in dataset B ID PDB Class Organism Res (Å) PDB Class Mesophile Res (Å) ΔÅ %identity Functional Class Description 1 1A2Z A a/b Thermococcus litoralis 1.73 1AUG A a/b Bacillus amyloliquefaciens 2.00 0.27 37 Peptidase Pyrrolidone Carboxyl Peptidase 2 1A53 0 a/b Sulfolobus solfataricus 2.00 1PII 0 a/b Escherichia coli 2.00 0.00 38 Synthase Indole-3-Glycerolphosphate Synthase 3 1DQI A mainly b Pyrococcus furiosus 1.70 1DFX 0 mainly b Desulfovibrio desulfuricans 1.90 0.20 34 Oxidoreductase Superoxide Reductase 4 1FTR A a+b Methanopyrus kandleri 1.70 1M5S A a+b Methanosarcina barkeri 1.85 0.15 59 Transferase Formyltransferase 5 1DD3 A a/b Thermotoga maritima 2.00 1CTF 0 a/b Escherichia coli 1.70 0.3 69 Ribosomal Ribosomal Protein 6 1G29 1 a/b Thermococcus litoralis 1.90 1B0U A a/b Salmonella typhimurium 1.50 0.40 31 Sugar Binding Malk Protein 7 1HDG O a/b Thermotoga maritima 2.50 1RM4 A a/b Spinacia oleracea 2.00 0.50 56 Oxidoreductase Glyceraldehyde 3 Phosphate Dehydrogenase 8 1HQK A a/b Aquifex aeolicus 1.60 1W19 A a/b Mycobacterium tuberculosis 2.00 0.40 50 Transferase Lumazine Synthase 9 1I4N A a/b Thermotoga maritima 2.50 1PII 0 a/b Escherichia coli 2.00 0.50 34 Lyase Indole-3-Glycerolphosphate Synthase 10 1IOF A a/b Pyrococcus furiosus 2.20 1AUG A a/b Bacillus amyloliquefaciens 2.00 0.20 43 Hydrolase Pyrrolidone-Carboxylate Peptidase 11 1IU8 A a/b Pyrococcus horikoshii 1.60 1AUG A a/b Bacillus amyloliquefaciens 2.00 0.40 45 Hydrolase Pyrrolidone-Carboxylate Peptidase 12 1J0A A a/b Pyrococcus horikoshii 2.50 1TZJ A a/b Pseudomonas sp .

2.00 0.20 59 Oxidoreductase Superoxide Dismutase 46 1SRV A a/b Thermus thermophilus 1.70 1KID 0 a/b Escherichia coli 1.70 0.00 69 Chaperone Groel 47 1UKW A mainly a Thermus thermophilus 2.40 1RX0 A mainly a Homo sapiens 1.77 0.63 39 Oxidoreductase Acil-Coa Dehydrogenase 48 1UZB A a/b Thermus thermophilus 1.40 1O0A A a/b Halobacterium salinarum 1.42 0.02 34 Oxidoreductase 1-Pyrroline-5-Carboxylate Dehydrogenase 49 1V6S A a/b Thermus thermophilus 1.50 16PK 0 a/b Trypanosoma brucei 1.60 0.10 44 Transferase Phosphoglycerate Kinase 50 1V8F A a/b Thermus thermophilus 1.90 1N2E A a/b Mycobacterium tuberculosis 1.60 0.30 55 Ligase Pantothenate Synthetase 51 1V8G A a/b Thermus thermophilus 2.10 1VQU A a/b Nostoc sp .

Publication Year: 2008