Primary Citation PubMed: 11856311
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CoNSEnsX: an ensemble view of protein structures and NMR-derived experimental data.
(2010) BMC Struct Biol 10
PubMed: 21034466 | PubMedCentral: PMC2987814 | DOI: 10.1186/1472-6807-10-39
of models Reference(s) S_1KGM Solution NMR ensemble 10 [ 46 ] S_COCO Solution NMR ensemble (1KGM) plus COCO-derived conformers 20 this study S_NN MUMO ensemble 32 [ 28 ] S_CNS RECOORD ensemble calcula... ed with CNS 25 [ 34 ] S_CNW RECOORD ensemble calculated with CNS in water 25 [ 34 ] S_CYA RECOORD ensemble calculated with CYANA 25 [ 34 ] S_CYW RECOORD ensemble calculated with CYANA in water 25 [ 34 ] S_1KGMMD 5ns MD simulation started from the NMR structure 1KGM 32 this study With the exception of 1 H- 1 H distance restraints, all the above listed parameters were complied into a single BMRB format file that was used as input for CoNSEnsX.
For ubiquitin, the starting conformer was the X-ray structure (PDB ID 1UBQ [ 55 ]) available; for SGCI, we used the fifth (representative) conformer in its deposited NMR-derived structure (PDB ID 1KGM [ 46 ]).
Publication Year: 2010
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