Citations in PubMed

Primary Citation PubMed: 11604388 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 5

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Toward the estimation of the absolute quality of individual protein structure models.

(2011) Bioinformatics 27

PubMed: 21134891 | PubMedCentral: PMC3031035 | DOI: 10.1093/bioinformatics/btq662

Three protein structures have in the meantime been superseded by newer entries in the PDB: 1un7 has been replaced by 2vhl, 1nrh by 1u8x and 1jsv by 2afb.

Publication Year: 2011

Hydrogen bonding penalty upon ligand binding.

(2011) PLoS One 6

PubMed: 21698148 | PubMedCentral: PMC3117785 | DOI: 10.1371/journal.pone.0019923

It has also been observed that larger HBPs appear in some X-ray structures, e.g., the structures of PDB code 3KVX and 1JSV, and the large values actually originate from poor fitting of small molecules... to the density, a common problem in crystallography [40] which can be manifested by clash of atoms.

Publication Year: 2011

ReFlexIn: a flexible receptor protein-ligand docking scheme evaluated on HIV-1 protease.

(2012) PLoS One 7

PubMed: 23110159 | PubMedCentral: PMC3480487 | DOI: 10.1371/journal.pone.0048008

The last three non-binders correspond to ligands that bind to protein kinases (ligands from pdb ID's 1FMO, 1FVV, and 1JSV).

Publication Year: 2012

A structure-guided approach for protein pocket modeling and affinity prediction.

(2013) J Comput Aided Mol Des 27

PubMed: 24214361 | PubMedCentral: PMC3851759 | DOI: 10.1007/s10822-013-9688-9

PDB codes of the pool of protein structures considered for model guidance in the CDK2 study: 1AQ1, 1FVT, 1FVV, 1GIH, 1B38, 1B39, 1FIN, 1FQ1, 1GY3, 1HCK, 1JST, 1QMZ, 1H08, 1DI8, 1H01, 1H00, 1E9H, 1JVP,... 1KE5, 1KE6, 1KE7, 1KE8, 1KE9, 1H07, 1E1X, 1JSV 26.

Publication Year: 2013

PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4493148

PDB ID Resolution (Å) 1GZ8 1.30 1JVP 1.53 1H00 1.60 1OIT 1.60 1URW 1.60 1H01 1.79 1H08 1.80 1E1X 1.85 1H07 1.85 1H0V 1.90 1OIR 1.91 1E1V 1.95 1PXI 1.95 1JSV 1.96 1PXO 1.96 1AQ1 2.00 1GII 2.00 ... KE6 2.00 1KE7 2.00 1KE8 2.00 1KE9 2.00 1PYE 2.00 1R78 2.00 1CKP 2.05 1DM2 2.10 1H0W 2.10 1DI8 2.20 1FVT 2.20 1GIJ 2.20 1KE5 2.20 1W0X 2.20 1VYZ 2.21 1PXJ 2.30 1PXP 2.30 1OIQ 2.31 1V1K 2.31 1P2A 2.50 1PXL 2.50 1PXN 2.50 1PF8 2.51 1PXM 2.53 1G5S 2.61 1GIH 2.80 1PXK 2.80 The final score used to rank compounds was purposely designed to be the average score across these 44 structures of CDK2 so as to account for structural variability.

Publication Year: 2015