Citations in PubMed

Primary Citation PubMed: 11679726 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 2

Citations in PubMed

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PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Unit-cell determination from randomly oriented electron-diffraction patterns.

(2009) Acta Crystallogr D Biol Crystallogr 65

PubMed: 19564682 | PubMedCentral: PMC2703568 | DOI: 10.1107/S0907444909003163

Table 1 Unit-cell parameters of potassium penicillin G determined by single-crystal X-ray diffraction and electron diffraction of single nanocrystals from a powder sample using our algorithm Sample Me... hod a (Å) b (Å) c (Å) α = β = γ (°) Potassium penicillin G X-ray diffraction (literature) 6.342 9.303 30.015 90 Potassium penicillin G Electron diffraction 6.4 9.3 31 90 Sodium oxacillin X-ray diffraction (literature) 7.342 10.303 26.7 90 Sodium oxacillin Electron diffraction 7.3 10.1 27 90 Table 2 Representative unit-cell parameters of orthorhombic hen egg-white lysozyme determined by single X-ray diffraction (first three entries) and electron diffraction of single nanocrystals from a powder sample using the new algorithm Method a (Å) b (Å) c (Å) α = β = γ (°) X-ray diffraction 1 (PDB code 1wtm ) 30.43 56.44 73.73 90 X-ray diffraction 2 (PDB code 1jj1 ) 30.56 58.99 68.26 90 X-ray diffraction 3 (PDB code 1f10 ) 30.58 55.86 68.58 90 Electron diffraction 31.5 52.5 89 90

Publication Year: 2009

A robust bulk-solvent correction and anisotropic scaling procedure.

(2005) Acta Crystallogr D Biol Crystallogr 61

PubMed: 15983406 | PubMedCentral: PMC2808320 | DOI: 10.1107/S0907444905007894

Figure 3 Flat bulk-solvent model parameters k sol and B sol for 35 structures selected from the PDB (PDB codes 1ci3, 1gzk, 1jh7, 1jj1, 1jvx, 1jzb, 1ev8, 1evf, 1k33, 1ijk, 1izr, 1kk7, 1kzn, 1le... ,1 lfv, 1dzj, 1m5u, 1m8s, 1nfg, 1oz4, 3gwx, 1ev5, 1evg, 1f3u, 1g1b, 1p9h, 1r30, 1tve, 1hw3, 1hw4, 1ijb, 1izp, 1izq, 1ktk, 2gwx).

Figure 4 R factor ( a ) and ML function ( b ) (ML is normalized by the number of reflections in bins) calculated in resolution bins (for the structure with PDB code 1jj1 ): no scaling and bulk-solvent correction (black), parameters k sol and B sol and scale matrix B cart taken from the PDB file (blue), scaling and bulk-solvent correction parameters calculated using CCTBX with the least-squares ( a ) and maximum-likelihood target ( b ).

Figure 5 R factor as a function of resolution (in Å) for the structures with PDB code 1jj1 ( a ) and 1lee ( b ).

In order to evaluate the model improvement arising from more reasonable bulk-solvent parameters, R factors versus resolution were calculated for all selected models and a typical example for one model (PDB code 1jj1 ) is presented in Fig.

Publication Year: 2005