Primary Citation PubMed: 11707581
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The SARS-unique domain (SUD) of SARS coronavirus contains two macrodomains that bind G-quadruplexes.
(2009) PLoS Pathog 5
PubMed: 19436709 | PubMedCentral: PMC2674928 | DOI: 10.1371/journal.ppat.1000428
Furthermore, we observed a significant gel shift for SUD core when we added the short oligonucleotide UGGGGU, which has also been shown to form a G-quadruplex (  ; PDB code 1J8G).
Publication Year: 2009
Structural dynamics of possible late-stage intermediates in folding of quadruplex DNA studied by molecular simulations.
(2013) Nucleic Acids Res 41
PubMed: 23700306 | PubMedCentral: PMC3737530 | DOI: 10.1093/nar/gkt412
Six of them were taken from the Protein Data Bank (PDB): (i) the nuclear magnetic resonance (NMR) solution structure of d[T 2 (G 3 T 2 A) 3 G 3 A] (2GKU, first frame) ( 12 ), a 3+1 (hybrid) monomolecu... ar quadruplex with three tetrads; (ii) the X-ray structure of d[A(G 3 T 2 A) 3 G 3 ] (1KF1) ( 45 ) folded in a monomolecular parallel quadruplex with three tetrads; (iii) the X-ray structure of [d(G 4 T 4 G 4 )] 2 (1JPQ) ( 46 ) Oxytricha nova telomeric dimeric antiparallel quadruplex with four tetrads; (iv) the X-ray structure of [d(TG 4 T)] 4 (352D) ( 47 ), forming four consecutive parallel stranded guanine tetrads with thymidines unstructured and bulged into space (one disordered thymidine residue was modeled); (v) the structure of RNA parallel quadruplex [r(UG 4 U)] 4 (1J8G) ( 48 ), forming four G-tetrads complemented by uridines that are bulged out; and (vi) the X-ray structure of [d(G 4 )] 4 (3TVB) ( 49 ), forming a parallel stranded stem with the first tetrad all- syn .
Publication Year: 2013
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