Citations in PubMed

Primary Citation PubMed: 12411581 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 2

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Revised Mimivirus major capsid protein sequence reveals intron-containing gene structure and extra domain.

(2009) BMC Mol Biol 10

PubMed: 19432951 | PubMedCentral: PMC2688009 | DOI: 10.1186/1471-2199-10-39

Mol Cell 2004 16 673 685 15574324 10.1016/j.molcel.2004.11.016 RCSB Protein Data Bank PSIPRED protein structure prediction server Jones DT Protein secondary structure prediction based on position-spec... fic scoring matrices J Mol Biol 1999 292 195 202 10493868 10.1006/jmbi.1999.3091 McGuffin LJ Bryson K Jones DT The PSIPRED protein structure prediction server Bioinformatics 2000 16 404 405 10869041 10.1093/bioinformatics/16.4.404 Nandhagopal N Simpson AA Gurnon JR Yan X Baker TS Graves MV Van Etten JL Rossmann MG The structure and evolution of the major capsid protein of a large, lipid-containing DNA virus Proc Natl Acad Sci USA 2002 99 14758 14763 12411581 10.1073/pnas.232580699 Kutish GF Li Y Lu Z Furuta M Rock DL Van Etten JL Analysis of 76 kb of the Chlorella Virus PBCV-1 330-kb Genome: Map Positions 182 to 258 Virology 1996 223 303 307 8806566 10.1006/viro.1996.0482 Yáñez RJ Rodriguez JM Nogal ML Yuste L Enriquez C Rodriguez JF Viñuela E Analysis of the complete nucleotide sequence of African Swine Fever virus Virology 1995 208 249 278 11831707 10.1006/viro.1995.1149 Griffiths-Jones S Moxon S Marshall M Khanna A Eddy SR Bateman A Rfam: annotating non-coding RNAs in complete genomes Nucleic Acids Research 2005 33 D121 D124 15608160 10.1093/nar/gki081 Zhou Y Lu C Wu QJ Wang Y Sun ZT Deng JC Zhang Y GISSD: Group I Intron Sequence and Structure Database Nucleic Acids Research 2008 D31 D37 17942415 Berger P Papazian L Drancourt M La Scola B Auffray JP Raoult D Ameba-associated microorganisms and diagnosis of nosocomial pneumonia Emerg Infect Dis 2006 12 248 255 16494750 La Scola B Marrie TJ Auffray JP Raoult D Mimivirus in pneumonia patients Emerg Infect Dis 2005 11 449 452 15757563 Raoult D Renesto P Brouqui P Laboratory infection of a technician by Mimivirus Ann Intern Med 2006 144 702 703 16670147

The APM Capsid protein 1 is overall 45% identical to that of the Chlorella virus PBCV1 [PDB: 1J5Q ] [ 15 ] but 200 amino-acids are inserted at a position of a stretch of 50 residues in the Chlorella virus Capsid protein, between Trp264 and Ser315 (Figure 4A ).

(A) Sequence numbering is from the Chlorella virus capsid [PDB: 1J5Q ].

An insertion of 200 AA replaces a coil motif in 1J5Q (positions 265–315) not belonging to the «jelly-roll» motifs.

Publication Year: 2009


A survey of protein structures from archaeal viruses.

(2013) Life (Basel) 3

PubMed: 25371334 | PubMedCentral: PMC4187194 | DOI: 10.3390/life3010118

The conserved coat protein fold of STIV B345 (PDB ID 2BBD [ 19 ]), PRD1 P3 (PDB ID 1GW7 [ 24 ]), and PBCV-1 Vp54 (PDB ID 1J5Q [ 21 ]) from viruses that infect hosts in Archaea, Bacteria, and Eukarya, ... espectively.

Publication Year: 2013