Primary Citation PubMed: 12411581
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Revised Mimivirus major capsid protein sequence reveals intron-containing gene structure and extra domain.
(2009) BMC Mol Biol 10
PubMed: 19432951 | PubMedCentral: PMC2688009 | DOI: 10.1186/1471-2199-10-39
Mol Cell 2004 16 673 685 15574324 10.1016/j.molcel.2004.11.016 RCSB Protein Data Bank PSIPRED protein structure prediction server Jones DT Protein secondary structure prediction based on position-spec... fic scoring matrices J Mol Biol 1999 292 195 202 10493868 10.1006/jmbi.1999.3091 McGuffin LJ Bryson K Jones DT The PSIPRED protein structure prediction server Bioinformatics 2000 16 404 405 10869041 10.1093/bioinformatics/16.4.404 Nandhagopal N Simpson AA Gurnon JR Yan X Baker TS Graves MV Van Etten JL Rossmann MG The structure and evolution of the major capsid protein of a large, lipid-containing DNA virus Proc Natl Acad Sci USA 2002 99 14758 14763 12411581 10.1073/pnas.232580699 Kutish GF Li Y Lu Z Furuta M Rock DL Van Etten JL Analysis of 76 kb of the Chlorella Virus PBCV-1 330-kb Genome: Map Positions 182 to 258 Virology 1996 223 303 307 8806566 10.1006/viro.1996.0482 Yáñez RJ Rodriguez JM Nogal ML Yuste L Enriquez C Rodriguez JF Viñuela E Analysis of the complete nucleotide sequence of African Swine Fever virus Virology 1995 208 249 278 11831707 10.1006/viro.1995.1149 Griffiths-Jones S Moxon S Marshall M Khanna A Eddy SR Bateman A Rfam: annotating non-coding RNAs in complete genomes Nucleic Acids Research 2005 33 D121 D124 15608160 10.1093/nar/gki081 Zhou Y Lu C Wu QJ Wang Y Sun ZT Deng JC Zhang Y GISSD: Group I Intron Sequence and Structure Database Nucleic Acids Research 2008 D31 D37 17942415 Berger P Papazian L Drancourt M La Scola B Auffray JP Raoult D Ameba-associated microorganisms and diagnosis of nosocomial pneumonia Emerg Infect Dis 2006 12 248 255 16494750 La Scola B Marrie TJ Auffray JP Raoult D Mimivirus in pneumonia patients Emerg Infect Dis 2005 11 449 452 15757563 Raoult D Renesto P Brouqui P Laboratory infection of a technician by Mimivirus Ann Intern Med 2006 144 702 703 16670147
The APM Capsid protein 1 is overall 45% identical to that of the Chlorella virus PBCV1 [PDB: 1J5Q ] [ 15 ] but 200 amino-acids are inserted at a position of a stretch of 50 residues in the Chlorella virus Capsid protein, between Trp264 and Ser315 (Figure 4A ).
(A) Sequence numbering is from the Chlorella virus capsid [PDB: 1J5Q ].
An insertion of 200 AA replaces a coil motif in 1J5Q (positions 265–315) not belonging to the «jelly-roll» motifs.
Publication Year: 2009
A survey of protein structures from archaeal viruses.
(2013) Life (Basel) 3
PubMed: 25371334 | PubMedCentral: PMC4187194 | DOI: 10.3390/life3010118
The conserved coat protein fold of STIV B345 (PDB ID 2BBD [ 19 ]), PRD1 P3 (PDB ID 1GW7 [ 24 ]), and PBCV-1 Vp54 (PDB ID 1J5Q [ 21 ]) from viruses that infect hosts in Archaea, Bacteria, and Eukarya, ... espectively.
Publication Year: 2013
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