Citations in PubMed

Primary Citation PubMed: 10194298 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 2

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Sizing the protein translocation pathway of colicin Ia channels.

(2003) J Gen Physiol 122

PubMed: 12860927 | PubMedCentral: PMC2229546 | DOI: 10.1085/jgp.200308852

Structures of α-conotoxin ImI were obtained from the Protein Data Bank ( Berman et al., 2000 ) files 1IMI ( Maslennikov et al., 1999 ), 1IM1 ( Rogers et al., 1999 ), 1CNL ( Gehrmann et al., 19... 9 ), and 1G2G ( Lamthanh et al., 1999 ), and inspected as above.

Publication Year: 2003


PEP-FOLD: an updated de novo structure prediction server for both linear and disulfide bonded cyclic peptides.

(2012) Nucleic Acids Res 40

PubMed: 22581768 | PubMedCentral: PMC3394260 | DOI: 10.1093/nar/gks419

Results obtained for 34 cyclic peptides with disulfide bonds pdb Id L #SS RC sOPEP best FS-d RC-d CG a AA FS-d RC-d CG AA 1im7 21 1 3:9::15:21 3.9 3.9 100 0 2.5 2.5 100 1 1jbl 16 1 2:14 3.3 3.3 100 1 ... .8 1.8 0 0 1n0a b 17 1 7:15 0.7 0.7 0 1 0.4 0.4 0 0 1n0c 24 1 2:11::14:24 2.3 2.3 100 1 0.4 0.4 0 1 1nim 24 1 1:23 3.8 1.8 0 0 3.4 2.8 0 1 1gnb 14 2 2:9::12:14 4.8 4.1 50 1 4 3.8 50 0 1b45 13 2 – 3.6 3.3 100 1 2.3 2.2 0 0 1etl 22 2 – 3.1 3.1 100 1 1.6 1.6 0 0 1hje 19 2 – 3.6 3.6 50 1 2.2 2.2 50 2 1hp9 12 2 2:11 3.5 3.5 50 1 2.2 2.2 50 1 1ien 13 2 – 4.8 4.8 50 0 2.5 2.5 0 0 1im1 14 2 – 1.3 1.2 0 1 1.2 1.2 50 0 1kcn 16 2 – 5.7 5.6 100 0 3.5 2.8 50 1 1kwd b 30 2 3:29 2.9 2.1 100 2 2 1.3 0 1 1mii 11 2 – 1.8 1.8 50 0 1.6 1.6 0 0 1oig 15 2 2:7::11:14 6.5 6.1 50 1 4.8 4.7 50 1 1r8t 24 2 1:22 4.5 3.4 100 1 2.6 2.2 50 1 1rpc 21 2 3:21 6.9 6.3 50 1 4.4 4 0 0 1ter 21 2 – 7 5.9 50 1 3 2.8 50 0 1v6r 26 2 1:23 5.1 5.1 100 2 3.9 3.9 0 0 1wqc 13 2 2:13 1.7 1.3 100 2 1.2 1.1 100 2 1x7k 22 2 1:17 4.2 2.5 0 0 4.2 2.5 0 0 1xgb 16 2 – 3.5 3 0 0 3 3 50 2 2ajw 13 2 – 2.4 0.9 50 2 1.3 1 0 0 2i28 28 2 – 2.1 2.1 100 1 1.5 1.5 0 0 2oq9 24 2 8:24 9.2 4 100 1 3.5 3.3 50 1 2efz 12 3 – 4.2 4.2 0 1 2.1 2.1 66.7 1 2nx7 13 3 2:13 6.9 6.9 33.3 1 4.1 4 33.3 1 1mmc 10 3 – 7.1 6.1 66.7 2 4.6 4.6 33.3 0 1orx 22 3 1:19 4.8 4.8 33.3 1 2.9 2.7 0 0 1sp7 28 3 1:10::12:28 4.5 4.3 66.7 2 2.6 2 33.3 0 1v5a 28 3 – 5 5.1 66.7 1 3.7 3.8 0 0 1wm8 b 19 3 6:16 7 7 66.7 2 3.6 3.6 66.7 2 2it7 28 3 2:28 4 4 66.7 1 3.7 3.7 66.7 1 Mean 4.2 3.7 61.2 2.7 2.5 29.5 PDB id, PDB identifier; L, peptide length; SS, number of disulfide bond; RC, the definition of the rigid core (PDB positions start at 1); FS-d (RC-d), full structure (rigid core) RMS deviation (Å) for the model of lowest energy (sOPEP) and the model of lowest RMSD (best); CG, SS bonds formed in the Coarse Grained representation; AA, SS bonds formed in the final all-atom representation.

Publication Year: 2012