Primary Citation PubMed: 11713685
Citations in PubMed
This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.
Data mentions are occurrences of PDB IDs in the full text articles from the
PubMedCentral Open Access Subset
of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed.
Article titles can be filtered by keywords and sorted by year.
GIS: a comprehensive source for protein structure similarities.
(2010) Nucleic Acids Res 38
PubMed: 20460464 | PubMedCentral: PMC2896118 | DOI: 10.1093/nar/gkq314
Left: protein structure alignment of adenosine deaminase (PDB code 2A3L, chain A, not aligned parts in light blue) ( 19 ) and urease (PDB code 1IE7, chain C, not aligned parts in dark blue) ( 20 ) gen... rated with GANGSTA+ ( 12 ) at http://agknapp.chemie.fu-berlin.de/gplus and visualized with PyMOL ( 26 ).
Using explicitly, the two protein structures files from the PDB (2A3L, chain A and 1IE7, chain C) 152 residues were aligned at 3.3 Å C α RMSD.
Here, we demonstrate the application of GANGSTA+ through our web service by aligning the protein structures of adenosine deaminase (PDB entry 2A3L, chain A) ( 19 ) and urease (PDB entry 1IE7, chain C) ( 20 ), which were recently in the focus of a review article by Hasegawa and Holm ( 21 ).
Figure 3 shows the structure alignment result for adenosine deaminase (PDB id 2A3L, chain A) and urease (PDB id 1IE7, chain C) obtained by applying GANGSTA+ through our web service [visualized with PyMOL ( 26 )].
Publication Year: 2010
N-substituted aminomethanephosphonic and aminomethane-P-methylphosphinic acids as inhibitors of ureases.
(2012) Amino Acids 42
PubMed: 21559954 | PubMedCentral: PMC3325405 | DOI: 10.1007/s00726-011-0920-4
Molecular modeling The crystal structure of the phosphate-urease ( Bacillus pasteurii ) complex refined to 1.85 Å obtained from the Protein Data Bank (1IE7) was used as the starting po... nt (Benini et al.
Publication Year: 2012
The RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics: Rutgers and UCSD/SDSC
RCSB PDB is a member of the
The RCSB PDB is funded by a grant (DBI-1338415) from the
National Science Foundation, the
National Institutes of Health, and the
US Department of Energy.