Primary Citation PubMed: 11713685
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GIS: a comprehensive source for protein structure similarities.
(2010) Nucleic Acids Res 38
PubMed: 20460464 | PubMedCentral: PMC2896118 | DOI: 10.1093/nar/gkq314
Left: protein structure alignment of adenosine deaminase (PDB code 2A3L, chain A, not aligned parts in light blue) ( 19 ) and urease (PDB code 1IE7, chain C, not aligned parts in dark blue) ( 20 ) gen... rated with GANGSTA+ ( 12 ) at http://agknapp.chemie.fu-berlin.de/gplus and visualized with PyMOL ( 26 ).
Using explicitly, the two protein structures files from the PDB (2A3L, chain A and 1IE7, chain C) 152 residues were aligned at 3.3 Å C α RMSD.
Here, we demonstrate the application of GANGSTA+ through our web service by aligning the protein structures of adenosine deaminase (PDB entry 2A3L, chain A) ( 19 ) and urease (PDB entry 1IE7, chain C) ( 20 ), which were recently in the focus of a review article by Hasegawa and Holm ( 21 ).
Figure 3 shows the structure alignment result for adenosine deaminase (PDB id 2A3L, chain A) and urease (PDB id 1IE7, chain C) obtained by applying GANGSTA+ through our web service [visualized with PyMOL ( 26 )].
Publication Year: 2010
N-substituted aminomethanephosphonic and aminomethane-P-methylphosphinic acids as inhibitors of ureases.
(2012) Amino Acids 42
PubMed: 21559954 | PubMedCentral: PMC3325405 | DOI: 10.1007/s00726-011-0920-4
Molecular modeling The crystal structure of the phosphate-urease ( Bacillus pasteurii ) complex refined to 1.85 Å obtained from the Protein Data Bank (1IE7) was used as the starting po... nt (Benini et al.
Publication Year: 2012
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