Primary Citation PubMed: 11313338
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Modeling conformational ensembles of slow functional motions in Pin1-WW.
(2010) PLoS Comput Biol 6
PubMed: 21152000 | PubMedCentral: PMC2996313 | DOI: 10.1371/journal.pcbi.1001015
To compare with the experimental WW domain structures we computed the RMSD of each of the 40 representative macrostates with respect to apo Pin1-WW (PDB 1i6c) and holo Pin1-WW (PDB 1i8g).
The main kinetic hub consists primarily of holo-like structures, close to the structure of Pin1-WW bound to CDC25 (PDB 1i8g).
Publication Year: 2010
The natively disordered loop of Bcl-2 undergoes phosphorylation-dependent conformational change and interacts with Pin1.
(2012) PLoS One 7
PubMed: 23272207 | PubMedCentral: PMC3525568 | DOI: 10.1371/journal.pone.0052047
Among them, three Pin1 WW domain structures with phosphopeptides, such as the C-terminal domain (CTD) of RNA polymerase II, a phosphothreonine peptide from CDC25, and a phosphothreonine peptide from h... man tau (PDB ID : 1F8A, 1I8G, and 1I8H respectively) were considered for analyses to select suitable three-dimensional (3D) structures to build the initial model.
(D) The structure of the Pin1 WW domain complexed with Tau peptide (PDB 1I8G).
Publication Year: 2012
Persistent topology and metastable state in conformational dynamics.
(2013) PLoS One 8
PubMed: 23565139 | PubMedCentral: PMC3614941 | DOI: 10.1371/journal.pone.0058699
Again, in Figure 10 we show three randomly sampled structures from each of the four selected clusters, and the red structures in Figure 10(A) and Figure 10(B) are the holo (PDB:1i8g) and apo (PDB:1i6c... structures, respectively.
(A) The alignment of three randomly sampled conformations from Cluster 1 to the holo structure (PDB:1i8g) shown in red.
The authors reported that two of those macrostates show good agreement with NMR structures (holo PDB:1i8g, apo PDB:1i6c) of the related Pin WW domain, and the third one is labeled as the unfolded state.
Publication Year: 2013
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