Citations in PubMed

Primary Citation PubMed: 11300769 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 5

Citations in PubMed

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PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Identification of nucleotide-binding sites in protein structures: a novel approach based on nucleotide modularity.

(2012) PLoS One 7

PubMed: 23209685 | PubMedCentral: PMC3507729 | DOI: 10.1371/journal.pone.0050240

Top ranked prediction for the binding site of the FAD molecule bound by the subunit F of the Alkyl hydroperoxide reductase from S. typhymurium (PDB code 1hyu).

Figure 4 reports a test case involving a FAD binding site on subunit F of the Alkyl hydroperoxide reductase from S. typhymurium (PDB code 1HYU).

Publication Year: 2012

Overexpression of chloroplast NADPH-dependent thioredoxin reductase in Arabidopsis enhances leaf growth and elucidates in vivo function of reductase and thioredoxin domains.

(2013) Front Plant Sci 4

PubMed: 24115951 | PubMedCentral: PMC3792407 | DOI: 10.3389/fpls.2013.00389

Similarly to the crystal structure of AhpF (PDB code 1HYU; Wood et al., 2001 ), which has a short α-helical linker between the NTRd and TRXd, the relatively long linker (~34 amino acids) in Ar... bidopsis NTRC is likely to form an α-helix as predicted.

Publication Year: 2013

Structural perspective on enzymatic halogenation.

(2009) Acc Chem Res 42

PubMed: 18774824 | PubMedCentral: PMC3980734 | DOI: 10.1021/ar800088r

33 At least three other flavin-dependent enzymes, AhpF (PDBID 1HYU), vanillyl alcohol oxidase (PDBID 1VAO), and l -aspartate oxidase (PDBID 1KNR), contain remarkably similar chloride binding sites aga... nst the same face of the flavin.

Publication Year: 2009

Identification of Multiple Soluble Fe(III) Reductases in Gram-Positive Thermophilic Bacterium Thermoanaerobacter indiensis BSB-33.

(2014) Int J Genomics 2014

PubMed: 25180173 | PubMedCentral: PMC4142287 | DOI: 10.1155/2014/850607

Three-dimensional structure of T. maritima was predicted using Salmonella enteric AhpF crystal structure (PDB ID 1HYU) as the template ( Table 3 ).

Bacteria/target proteins Templates (PDB ID) T. indiensis    LPD1 Geobacillus stearothermophilus dihydrolipoamide dehydrogenase (1EBD)  LPD2 Geobacillus stearothermophilus dihydrolipoamide dehydrogenase (1EBD)  Trx Escherichia coli thioredoxin reductase (1CL0)  NAD(P)H-nitrite reductase Novosphingobium aromaticivorans ferredoxin reductase ArR (3LXD)  Tdr Mycobacterium tuberculosis thioredoxin reductase (2A87)  Thioredoxin Hyperstable thioredoxin from Precambrian period (2YJ7)  Indolepyruvate ferredoxin oxidoreductase Pyrococcus furiosus 2-keto acid:ferredoxin oxidoreductase subunit alpha (1YD7) C. kluyveri    BfmBC Geobacillus stearothermophilus dihydrolipoamide dehydrogenase (1EBD) T. scotoductus    Trx Deinococcus radiodurans thioredoxin reductase (2Q7V)  LPD Geobacillus stearothermophilus dihydrolipoamide dehydrogenase (1EBD) M. gryphiswaldense    FeR5 Escherichia coli thioredoxin reductase (1CL0) D. desulfuricans    MreE Escherichia coli thioredoxin reductase (1CL0)  Thioredoxin Desulfovibrio vulgaris Hildenborough thioredoxin (2L6C)  MreG Pyrococcus furiosus 2-keto acid:ferredoxin oxidoreductase subunit alpha (1YD7) T. maritima    TR Salmonella enterica alkylhydroperoxide reductase subunit F AhpF (1HYU) Table 4 Pairwise sequence and structural similarity of T. indiensis proteins with Fe(III) reductases.

Publication Year: 2014

NADH oxidase and alkyl hydroperoxide reductase subunit C (peroxiredoxin) from Amphibacillus xylanus form an oligomeric assembly.

(2015) FEBS Open Bio 5

PubMed: 25737838 | PubMedCentral: PMC4338369 | DOI: 10.1016/j.fob.2015.01.005

Although the X-ray crystallographic analysis of A. xylanus NADH oxidase has not yet been conducted, that of S. typhimurium AhpF, which belongs to the same family as NADH oxidase and exhibits a 51.2% s... ared identity [3] , has already been analyzed (PDB code: 1HYU ) [24] .

4.9 Modeling of NADH oxidase The structure of NADH oxidase was manually built based on the crystal structure of AhpF (PDB entry 1HYU ) [24] using the Coot program [26] .

(C) A probable model of NADH oxidase was built using a crystal structure of AhpF (PDB code: 1HYU ).

Publication Year: 2015