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PDB ID Mentions in PubMed Central Article count: 3

Citations in PubMed

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PDB ID Mentions in PubMed Central

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A quantitative measure of electrostatic perturbation in holo and apo enzymes induced by structural changes.

(2013) PLoS One 8

PubMed: 23516628 | PubMedCentral: PMC3597595 | DOI: 10.1371/journal.pone.0059352

g004 Figure 4 Residues involved in intersubunit interactions in Cu-Zn superoxide dismutase (PDBid:1HL5).

Next, we compared two holoenzymes (PDBid:1HL5 and 1UXM), where one of the holoenzymes (PDBid: 1UXM) has the mutation A4V [53] .

We compared the holoenzyme (PDBid:1HL5, binds both Cu and Zn) to the apoenzyme(PDBid:1HL4, binds only Zn).

Publication Year: 2013

PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4475725

Strange RW , Antonyuk S , Hough MA , Doucette P , Rodriguez J , Hart PJ , Hayward LJ , Valentine JS , Hasnain SS , 2003 , The structure of holo type human Cu, Zn superoxide dismutase , http://www.rcsb... org/pdb/explore/ , Publicly available at RCSB Protein Data Bank (1HL5).

( A ) Structure of the mature homodimeric form of SOD1 (Cu 2 Zn 2 SOD1 S–S ) (pdb code: 1hl5) ( Strange et al., 2003 ).

Moreover, we have run additional calculations for process IV starting with the NMR derived structure of monomeric C6A/C111S/Q133E/F50E/G51E apoSOD1 S–S (PDB accession code 1RK7 [ Banci et al., 2003 ]), in which the electrostatic and Zn-binding loops are disordered, rather than from a monomer of the native dimer X-ray structure (PDB accession code 1HL5 [ Strange et al., 2003 ]).

( A ) Superposition of ribbon diagrams of the lowest energy HADDOCK model of the native dimer excited state of pWT apoSOD1 2SH (process I, blue) and the X-ray structure of Cu 2 Zn 2 SOD1 S–S (pdb code: 1hl5, green) ( Strange et al., 2003 ).

Publication Year: 2015

PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4493862

For the Zn 2+ binding site, the distances Zn 2+ –His are 0.1–0.2 Å larger than the corresponding distances in the crystal structure 1HL5 ( Table S6 ).

The distance Cu 2+ –O water is 2.35 Å, which is slightly shorter than the one in the crystal structure 1HL5 (2.62 Å) but still falls in a reasonable range based on other crystal structures of CuZnSOD (i.e., PDB ID: 1CB4( 1 )).

The distances to H46, H48, H120 are quite close to those in the crystal structure (PDB ID: 1HL5( 3 )) while the H63–CuDum distance is only 1.98 Å ( Table S6 ), which is 0.48 Å shorter than the one in the crystal structure 1HL5.

Publication Year: 2015