Primary Citation PubMed: 8917641
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On the evolutionary conservation of hydrogen bonds made by buried polar amino acids: the hidden joists, braces and trusses of protein architecture.
(2010) BMC Evol Biol 10
PubMed: 20513243 | PubMedCentral: PMC2892493 | DOI: 10.1186/1471-2148-10-161
Three examples of polar residues forming hydrogen bonds to coils including, A) a cysteine in the high potential iron-sulphur protein family [PDB: 1isu ], two asparates in B) the glycosyl hydrolase fam... ly 10 [PDB: 1tax ] and C) the serine/threonine protein kinases [PDB: 1hcl ].
Publication Year: 2010
Selective anticancer activity of a hexapeptide with sequence homology to a non-kinase domain of Cyclin Dependent Kinase 4.
(2011) Mol Cancer 10
PubMed: 21668989 | PubMedCentral: PMC3126777 | DOI: 10.1186/1476-4598-10-72
modelled from 1HCL (CDK2) Base template 1BLX , Variable regions differing by more than 2.0 Å rmsd.
Publication Year: 2011
Cofactor-mediated conformational control in the bifunctional kinase/RNase Ire1.
(2011) BMC Biol 9
PubMed: 21729334 | PubMedCentral: PMC3158555 | DOI: 10.1186/1741-7007-9-48
Coordinates are from PDB ID: 1hcl (apo-CDK2), 1b39 (ATP-bound CDK2), 1qmz (ATP-bound CDK2 with cyclin) and 1gy3 (ADP-bound CDK2 with cyclin).
Structure of a cyclin-dependent kinase from Giardia lamblia.
(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67
PubMed: 21904054 | PubMedCentral: PMC3169406 | DOI: 10.1107/S1744309111018070
The presented 1.85 Å resolution structure has structural homology to human CDK2 (PDB entry 1hcl ) and a slightly higher sequence homology to human CDK3, which to date has no solved str... cture.
Figure 3 Gl CDK (PBD entry 3gc0 ) superposed with human CDK2 (PDB entry 1hcl ; Schulze-Gahmen et al. , 1996 ▶ ).
This sequence is conserved between the Gl CDK and human CDK structures, with differences in the structures of the preceding loops between the Gl CDK structure and the human CDK2 structure (PDB entry 1hcl ; Schulze-Gahmen et al. , 1996 ▶ ).
Structural basis for the regulation of protein kinase A by activation loop phosphorylation.
(2012) J Biol Chem 287
PubMed: 22334660 | PubMedCentral: PMC3340281 | DOI: 10.1074/jbc.M111.335091
In the unphosphorylated protein Asp-184 is turned away from Gly-186 to a catalytically incompetent conformation similar to that seen in the inactive CDK2 structure (PDB ID code 1HCL ) ( 6 ) ( Fig. 4 D... ).
D , alignment of C R194A ( gray ) with the inactive form of CDK2 (1HCL; olive ) showing a similar disruption of the hydrogen bond linking the DFG Asp-184 to the Gly-186 amide nitrogen.
Publication Year: 2012
PubMed ID is not available.
Published in 2014
In monomeric Cdk2 (left; [PDB:1HCL]), the major C-helix (N-lobe) and the activation domain are close, ensuring that the catalytic pocket is inaccessible.
Publication Year: 2014
Published in 2015
Characterization of Monomeric CDK2 As a typical protein kinase, the monomeric CDK2 consists of 298 amino acids (PDB code: 1HCL, residues 1–298), and folds into a typical bilobal structure, wit... a smaller N -terminal lobe (residues 1–85) that contains an antiparallel five-strand β-sheet and a major C-helix, together with a larger C -terminal lobe predominantly composed of α-helix [ 66 ].
Publication Year: 2015
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