Citations in PubMed

Primary Citation PubMed: 8917641 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 12

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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ATP and MO25alpha regulate the conformational state of the STRADalpha pseudokinase and activation of the LKB1 tumour suppressor.

(2009) PLoS Biol 7

PubMed: 19513107 | PubMedCentral: PMC2686265 | DOI: 10.1371/journal.pbio.1000126

Residues from the C-lobe of STRADα (152–431) were superimposed onto the structures of inactive CDK2 (PDB ID 1HCK [56] ) and EGFR kinase (PDB ID 2GS7), and active CDK2 (... DB ID 1JST) and EGFR (PDB ID 2GS2).

Publication Year: 2009

A global optimization algorithm for protein surface alignment.

(2010) BMC Bioinformatics 11

PubMed: 20920230 | PubMedCentral: PMC2957401 | DOI: 10.1186/1471-2105-11-488

Figure 3 shows an example superimposition of the binding sites of ligand ATP of proteins 1atp and 1hck after the computed rototraslation is applied.

Publication Year: 2010

EDULISS: a small-molecule database with data-mining and pharmacophore searching capabilities.

(2011) Nucleic Acids Res 39

PubMed: 21051336 | PubMedCentral: PMC3013767 | DOI: 10.1093/nar/gkq878

( a ) the key interaction of ATP-binding pocket in the CDK2–ATP complex (PDB id: 1HCK).

Publication Year: 2011

Cysteine scanning mutagenesis (residues Glu52-Gly96) of the human P2X1 receptor for ATP: mapping agonist binding and channel gating.

(2011) J Biol Chem 286

PubMed: 21690089 | PubMedCentral: PMC3190727 | DOI: 10.1074/jbc.M111.260364

In preparation for ligand docking, atomic coordinates for ATP were extracted from the Protein Data Bank (entry 1HCK ).

Publication Year: 2011

On the molecular mechanisms of mitotic kinase activation.

(2012) Open Biol 2

PubMed: 23226601 | PubMedCentral: PMC3513839 | DOI: 10.1098/rsob.120136

( b ) A schematic of inactive Cdk2 alone (PDB code 1HCK), following the same conventions as figure 2 c .

( a ) (i) The autoinhibited conformation of Cdk2 (PDB code 1HCK).

Publication Year: 2012

Structure prediction and validation of the ERK8 kinase domain.

(2013) PLoS One 8

PubMed: 23326322 | PubMedCentral: PMC3543423 | DOI: 10.1371/journal.pone.0052011

The crystal structure of FUS3, ERK2, p38α and CDK2 were from the Protein Data Bank [21] ; entries ID: 2B9F [22] , 1ERK [23] , 1P38 [24] , 1HCK [25] .

Publication Year: 2013

A structure-guided approach for protein pocket modeling and affinity prediction.

(2013) J Comput Aided Mol Des 27

PubMed: 24214361 | PubMedCentral: PMC3851759 | DOI: 10.1007/s10822-013-9688-9

PDB codes of the pool of protein structures considered for model guidance in the CDK2 study: 1AQ1, 1FVT, 1FVV, 1GIH, 1B38, 1B39, 1FIN, 1FQ1, 1GY3, 1HCK, 1JST, 1QMZ, 1H08, 1DI8, 1H01, 1H00, 1E9H, 1JVP,... 1KE5, 1KE6, 1KE7, 1KE8, 1KE9, 1H07, 1E1X, 1JSV 26.

Publication Year: 2013

Chemical, target, and bioactive properties of allosteric modulation.

(2014) PLoS Comput Biol 10

PubMed: 24699297 | PubMedCentral: PMC3974644 | DOI: 10.1371/journal.pcbi.1003559

Also shown was a non-allosteric inhibitor (green, projected from PDB 1HCK) and an allosteric inhibitor (red, projected from PDB 3PY1).

Publication Year: 2014

Structural studies of B-type Aurora kinase inhibitors using computational methods.

(2010) Acta Pharmacol Sin 31

PubMed: 20139908 | PubMedCentral: PMC4002836 | DOI: 10.1038/aps.2009.188

It is a hydrophilic part of the binding site, where interactions between the receptor and the sugar moiety of the natural substrate are formed, as demonstrated in crystal structures such as adenosine ... omplexed with cAMP-dependent kinase (1FMO) or ATP complexed with CDK2 (1HCK).

Publication Year: 2010

Polyphony: superposition independent methods for ensemble-based drug discovery.

(2014) BMC Bioinformatics 15

PubMed: 25265915 | PubMedCentral: PMC4261739 | DOI: 10.1186/1471-2105-15-324

Analysis of CDK2 crystal structures A Polyphony script was used to download the structures of the 95% identity sequence cluster containing PDB code 1HCK, chain A from the RCSB website [ 61 ].

Publication Year: 2014

PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4463590

The yellow, pink and cyan patterns indicate the monomeric CDK2 (free state, coordinates 1HCK), CDK2/cyclin A complex (partially activated form, 1FIN) and phosphorylated dimer (fully activated state, 4... OM), respectively.

( A ) is the interaction network of ATP in monomeric CDK2 (coordinates 1HCK, resolution 1.9 Å); ( B ) is in CDK2/cyclin A dimer (1FIN, 2.3 Å); ( C ) is in the phosphorylated dimer (4EOM, 2.3 Å), respectively; ( D ) The B-factor (Å 2 ) distribution for the ATP atoms across the monomeric CDK2 (in black font) CDK2/cyclin A complex (in green) and phosphorylated dimer (in red).

In the inert CDK2 monomer (PDB code: 1HCK), the Thr160 among the activation segment conformation is buried away from solvent facing toward the conserved glycine-rich loop [ 69 ].

Publication Year: 2015

PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4493148

S1 Fig Crystal structure of human CDK2 with ATP (PDB ID: 1HCK).

Publication Year: 2015