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ATP and MO25alpha regulate the conformational state of the STRADalpha pseudokinase and activation of the LKB1 tumour suppressor.
(2009) PLoS Biol 7
PubMed: 19513107 | PubMedCentral: PMC2686265 | DOI: 10.1371/journal.pbio.1000126
Residues from the C-lobe of STRADα (152–431) were superimposed onto the structures of inactive CDK2 (PDB ID 1HCK  ) and EGFR kinase (PDB ID 2GS7), and active CDK2 (... DB ID 1JST) and EGFR (PDB ID 2GS2).
Publication Year: 2009
A global optimization algorithm for protein surface alignment.
(2010) BMC Bioinformatics 11
PubMed: 20920230 | PubMedCentral: PMC2957401 | DOI: 10.1186/1471-2105-11-488
Figure 3 shows an example superimposition of the binding sites of ligand ATP of proteins 1atp and 1hck after the computed rototraslation is applied.
Publication Year: 2010
EDULISS: a small-molecule database with data-mining and pharmacophore searching capabilities.
(2011) Nucleic Acids Res 39
PubMed: 21051336 | PubMedCentral: PMC3013767 | DOI: 10.1093/nar/gkq878
( a ) the key interaction of ATP-binding pocket in the CDK2–ATP complex (PDB id: 1HCK).
Publication Year: 2011
Cysteine scanning mutagenesis (residues Glu52-Gly96) of the human P2X1 receptor for ATP: mapping agonist binding and channel gating.
(2011) J Biol Chem 286
PubMed: 21690089 | PubMedCentral: PMC3190727 | DOI: 10.1074/jbc.M111.260364
In preparation for ligand docking, atomic coordinates for ATP were extracted from the Protein Data Bank (entry 1HCK ).
On the molecular mechanisms of mitotic kinase activation.
(2012) Open Biol 2
PubMed: 23226601 | PubMedCentral: PMC3513839 | DOI: 10.1098/rsob.120136
( b ) A schematic of inactive Cdk2 alone (PDB code 1HCK), following the same conventions as figure 2 c .
( a ) (i) The autoinhibited conformation of Cdk2 (PDB code 1HCK).
Publication Year: 2012
Structure prediction and validation of the ERK8 kinase domain.
(2013) PLoS One 8
PubMed: 23326322 | PubMedCentral: PMC3543423 | DOI: 10.1371/journal.pone.0052011
The crystal structure of FUS3, ERK2, p38α and CDK2 were from the Protein Data Bank  ; entries ID: 2B9F  , 1ERK  , 1P38  , 1HCK  .
Publication Year: 2013
A structure-guided approach for protein pocket modeling and affinity prediction.
(2013) J Comput Aided Mol Des 27
PubMed: 24214361 | PubMedCentral: PMC3851759 | DOI: 10.1007/s10822-013-9688-9
PDB codes of the pool of protein structures considered for model guidance in the CDK2 study: 1AQ1, 1FVT, 1FVV, 1GIH, 1B38, 1B39, 1FIN, 1FQ1, 1GY3, 1HCK, 1JST, 1QMZ, 1H08, 1DI8, 1H01, 1H00, 1E9H, 1JVP,... 1KE5, 1KE6, 1KE7, 1KE8, 1KE9, 1H07, 1E1X, 1JSV 26.
Chemical, target, and bioactive properties of allosteric modulation.
(2014) PLoS Comput Biol 10
PubMed: 24699297 | PubMedCentral: PMC3974644 | DOI: 10.1371/journal.pcbi.1003559
Also shown was a non-allosteric inhibitor (green, projected from PDB 1HCK) and an allosteric inhibitor (red, projected from PDB 3PY1).
Publication Year: 2014
Structural studies of B-type Aurora kinase inhibitors using computational methods.
(2010) Acta Pharmacol Sin 31
PubMed: 20139908 | PubMedCentral: PMC4002836 | DOI: 10.1038/aps.2009.188
It is a hydrophilic part of the binding site, where interactions between the receptor and the sugar moiety of the natural substrate are formed, as demonstrated in crystal structures such as adenosine ... omplexed with cAMP-dependent kinase (1FMO) or ATP complexed with CDK2 (1HCK).
Polyphony: superposition independent methods for ensemble-based drug discovery.
(2014) BMC Bioinformatics 15
PubMed: 25265915 | PubMedCentral: PMC4261739 | DOI: 10.1186/1471-2105-15-324
Analysis of CDK2 crystal structures A Polyphony script was used to download the structures of the 95% identity sequence cluster containing PDB code 1HCK, chain A from the RCSB website [ 61 ].
PubMed ID is not available.
Published in 2015
The yellow, pink and cyan patterns indicate the monomeric CDK2 (free state, coordinates 1HCK), CDK2/cyclin A complex (partially activated form, 1FIN) and phosphorylated dimer (fully activated state, 4... OM), respectively.
( A ) is the interaction network of ATP in monomeric CDK2 (coordinates 1HCK, resolution 1.9 Å); ( B ) is in CDK2/cyclin A dimer (1FIN, 2.3 Å); ( C ) is in the phosphorylated dimer (4EOM, 2.3 Å), respectively; ( D ) The B-factor (Å 2 ) distribution for the ATP atoms across the monomeric CDK2 (in black font) CDK2/cyclin A complex (in green) and phosphorylated dimer (in red).
In the inert CDK2 monomer (PDB code: 1HCK), the Thr160 among the activation segment conformation is buried away from solvent facing toward the conserved glycine-rich loop [ 69 ].
Publication Year: 2015
S1 Fig Crystal structure of human CDK2 with ATP (PDB ID: 1HCK).
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