Primary Citation PubMed: 12139449
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Published in 2015
Structural analysis of the predicted binding conformation of fluspirilene Fig 9 plots the predicted conformation of fluspirilene in complex with CDK2 (PDB ID: 1GZ8) using iview [ 16 ].
S2 Fig The crystal conformation of MBP in complex with CDK2 (PDB ID: 1GZ8).
The 4,914 compounds were sorted in the ascending order of their predicted binding free energy averaged across the 44 CDK2 structures, and the top-scoring ones were visually examined using iview [ 16 ] in the context of CDK2 using the X-ray crystal structure of the highest resolution, i.e. PDB ID 1GZ8 in this case ( Table 1 ).
PDB ID Resolution (Å) 1GZ8 1.30 1JVP 1.53 1H00 1.60 1OIT 1.60 1URW 1.60 1H01 1.79 1H08 1.80 1E1X 1.85 1H07 1.85 1H0V 1.90 1OIR 1.91 1E1V 1.95 1PXI 1.95 1JSV 1.96 1PXO 1.96 1AQ1 2.00 1GII 2.00 1KE6 2.00 1KE7 2.00 1KE8 2.00 1KE9 2.00 1PYE 2.00 1R78 2.00 1CKP 2.05 1DM2 2.10 1H0W 2.10 1DI8 2.20 1FVT 2.20 1GIJ 2.20 1KE5 2.20 1W0X 2.20 1VYZ 2.21 1PXJ 2.30 1PXP 2.30 1OIQ 2.31 1V1K 2.31 1P2A 2.50 1PXL 2.50 1PXN 2.50 1PF8 2.51 1PXM 2.53 1G5S 2.61 1GIH 2.80 1PXK 2.80 The final score used to rank compounds was purposely designed to be the average score across these 44 structures of CDK2 so as to account for structural variability.
Publication Year: 2015
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