Primary Citation PubMed: 12011052
Citations in PubMed
This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.
Data mentions are occurrences of PDB IDs in the full text articles from the
PubMedCentral Open Access Subset
of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed.
Article titles can be filtered by keywords and sorted by year.
Structure of a metal-independent bacterial glycosyltransferase that catalyzes the synthesis of histo-blood group A antigen.
(2012) Sci Rep 2
PubMed: 23230506 | PubMedCentral: PMC3516806 | DOI: 10.1038/srep00940
Comparison of BoGT6a with other members of the GT6 family BoGT6a is closely similar in structure to GTA (PDB id: 1ZI1 18 ), GTB (PDB id: 1R7U 19 ) and α3GT (PDB id: 1GX4 6 ) ( Fig. 1 ) with ov... rall r.m.s.d. 17 values of 1.96 (179 Cα atoms), 1.96 (180 Cα atoms) and 2.15 Å (200 Cα atoms) respectively.
Figure 4 Donor binding sites of (a) BoGT6a – UDP-GalNAc molecule modeled; (b) GTB-UDP-Gal (PDB id: 1ZJ1); (c) α3GT-UDP-2FGal (PDB id: 1GX4).
20124702 Figure 1 Cartoon representation of secondary structural elements of (a) BoGT6a (present study), (b) GTA (PDB id: 1ZI1) and c) α3GT (PDB id: 1GX4).
Models of complexes of UDP-Gal and UDP-GalNAc with BoGT6a were generated by molecular docking of UDP-Gal and UDP-GalNAc using α3GT in complex with UDP (PDB: 1GX4 6 ), UDP-Gal (PDB: 2VS5 11 ), as templates and UDP-GlcNAc extracted from its complex with MurG (PDB: 1NLM 22 ).
(a) BoGT6a in complex with FAL; (b) GTA in complex with H-antigen (PDB id: 1LZI); (c) GTB in complex with H-antigen (PDB id: 1LZJ); (d) α3GT in complex with LacNAc (PDB id: 1GX4).
Publication Year: 2012
RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics: Rutgers and UCSD/SDSC
RCSB PDB is a member of the
The RCSB PDB is funded by a grant (DBI-1338415) from the
National Science Foundation, the
National Institutes of Health, and the
US Department of Energy.