Primary Citation PubMed: 12037300
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Potent and specific inhibition of glycosidases by small artificial binding proteins (affitins).
(2014) PLoS One 9
PubMed: 24823716 | PubMedCentral: PMC4019568 | DOI: 10.1371/journal.pone.0097438
Partial molecular replacement solutions using either HEWL (PDB code, 1GWD) or CelD (PDB code, 1CLC) as search models displayed extra electron density readily interpretable as the Affitin chain, which ... as manually traced.
Publication Year: 2014
PubMed ID is not available.
Published in 2015
The bromide locations are isomorphous with chlorides and bromides in published lysozyme structures (chloride, PDB entries 1gwd , 2w1l , 2w1y , 2w1x , 2w1m , 4a7d , 2xoa , 2xbs , 2xbr , 2xjw , 1w6z and... 4aga ; bromide, PDB entry 1azf ), which typically contain from three to nine halides.
Publication Year: 2015
The 3D structure of LYS in complex with its 1,2-ethanediol ligand (PDB code: 1GWD) was downloaded from the PDB databse.
We extracted the ligand GA from the docked LYS-GA model and docked the after-extracted system with the original ligand 1,2-ethanediol (extracted from the LYS complex which was downloaded from the PDB database (coding 1GWD)).
Molecular Docking and Molecular Dynamics Simulations The three-dimensional structure of LYS in complex with its 1,2-ethanediol ligand was obtained from the Protein Data Bank (PDB ID: 1GWD) ( http://www.pdb.org ).
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