Citations in PubMed

Primary Citation PubMed: 11779463 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 4

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Allosteric transitions of supramolecular systems explored by network models: application to chaperonin GroEL.

(2009) PLoS Comput Biol 5

PubMed: 19381265 | PubMedCentral: PMC2664929 | DOI: 10.1371/journal.pcbi.1000360

Results are illustrated for a ANM steps k  = 1, 7 and 13 along the transition R″→T of a single subunit (subunit A in the respective PDB structures 1GRU and 1GR5... .

The end states refer to subunit A in the PDB structures 1GRU and 1GR5.

(B) 1GRU; identified with the R″/R state; it contains seven ADPs and seven ATPs bound to the cis and trans rings, respectively.

A. Single GroEL subunit (*) RMSD (Å) 1GR5_A (T) 2C7E_A (R) 2C7C_A (R′) 1GRU_A (R″) 1GR5_A ( T ) – 5.21 12.06 12.33 2C7E_A ( R ) 5.21 – 12.23 12.35 2C7C_A ( R′ ) 12.06 12.23 – 1.50 1GRU_A ( R″ ) 12.33 12.35 1.50 – B. Intact GroEL RMSD (Å) 1GR5 (T/T) 2C7E (R/T) 2C7C (R′/T) 1AON (R″/T) 1GRU (R″/R) 1GR5 ( T/T ) – 6.72 12.09 11.48 12.19 2C7E ( R/T ) 6.72 – 10.85 10.65 11.03 2C7C ( R′T ) 12.09 10.85 – 3.17 2.65 1AON ( R″/T ) 11.48 10.65 3.17 – 2.67 1GRU ( R″/R ) 12.19 11.03 2.65 2.67 – (*) based on α-carbons.

The PDB ids for the structures T/T, R/T, R″/R, R′/T and R″/T are 1GR5, 2C7E and 1GRU [68] , 2C7C [15] and 1AON [20] , respectively.

Publication Year: 2009


Optimal identification of semi-rigid domains in macromolecules from molecular dynamics simulation.

(2010) PLoS One 5

PubMed: 20498702 | PubMedCentral: PMC2869351 | DOI: 10.1371/journal.pone.0010491

A MD trajectory of the chaperone GroEL-GroES (PDB ID code, 1GRU), containing solute atoms.

Publication Year: 2010


Conformational sampling and nucleotide-dependent transitions of the GroEL subunit probed by unbiased molecular dynamics simulations.

(2011) PLoS Comput Biol 7

PubMed: 21423709 | PubMedCentral: PMC3053311 | DOI: 10.1371/journal.pcbi.1002004

A total of 21 crystal structures (287 GroEL subunits) were kept for further analysis (PDB-codes: 1PCQ, 1PF9, 1SVT, 3C9V, 1AON, 1GRU, 1MNF, 1XCK, 2C7D, 2NWC, 3E76, 2EU1, 1SS8, 1SX3, 1J4Z, 1KPO, 2C7E, 1... P8, 1OEL, 1WE3, 1WF4).

Publication Year: 2011


ATTRACT-EM: a new method for the computational assembly of large molecular machines using cryo-EM maps.

(2012) PLoS One 7

PubMed: 23251350 | PubMedCentral: PMC3522670 | DOI: 10.1371/journal.pone.0049733

This matrix was obtained by fitting the reference structure to 1GRU, the fitted structure provided by the authors of the GroES-GroEL density map [35] .

Publication Year: 2012