Primary Citation PubMed: 17405861
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Integron gene cassettes: a repository of novel protein folds with distinct interaction sites.
(2013) PLoS One 8
PubMed: 23349695 | PubMedCentral: PMC3548836 | DOI: 10.1371/journal.pone.0052934
Some topological relationship is detected to the Ivy virulence factor proteins (e.g. 2.5 Å rmsd over 71 residues of the E.coli Ivy protein (PDB 1GPQ  ).
Publication Year: 2013
Computational survey of peptides derived from disulphide-bonded protein loops that may serve as mediators of protein-protein interactions.
(2014) BMC Bioinformatics 15
PubMed: 25231912 | PubMedCentral: PMC4262234 | DOI: 10.1186/1471-2105-15-305
Table 1 Uniprot Proteins containing a disulphide-bonded loop comprising over 50% of a PDB protein-protein interface Uniprot Protein containing Interacting PDB ID accession disulphide-bonded loop prote... n P02462 Collagen alpha-1(IV) chain [Cleaved into: Arresten], Homo sapiens Homodimer 1LI1 Q7T1K6 Natrin-1 (Cysteine-rich venom protein 1) (NA-CRVP1) (Protein G2a), Naja atra Homodimer 1XTA P01133 Pro-epidermal growth factor (EGF) [Cleaved into: Epidermal growth factor (Urogastrone)], Homo sapiens EGF Receptor (ErbB1), Homo sapiens 1IVO P01058 Bowman-Birk type proteinase inhibitor, Phaseolus angularis Bovine trypsin 1TAB P01062 Bowman-Birk type trypsin inhibitor, Vigna radiata Trypsin, Bos taurus 1G9I P17734 Bowman-Birk type seed trypsin and chymotrypsin inhibitor (BTCI), Vigna unguiculata Trypsin, Bos taurus 2G81 P0AD59 Inhibitor of vertebrate lysozyme, Escherichia coli Lysosome C, Gallus gallus 1GPQ Q9JHF9 Lymphocyte antigen 96 (Ly-96) (ESOP-1) (Protein MD-2), Mus musculus Toll-like receptor 4 (TLR-4), Mus musculus 2Z64 A0S865 Irditoxin subunit B (IrTxB), Boiga irregularis Iridotoxin subunit A 2H7Z P50897 Palmitoyl-protein thioesterase 1 (PPT-1) (EC 184.108.40.206) (Palmitoyl-protein hydrolase 1), Homo sapiens Homodimer 3GRO P04004 Somatomedin-B subunit of Vitronectin (VN), Homo sapiens Plasminogen activator inhibitor-1 (PAI-1), Homo sapiens 1OC0 P04004 Somatomedin-B subunit of Vitronectin (VN), Homo sapiens Urokinase plasminogen activator surface receptor (uPAR), Homo sapiens 3BT2 Q03405 Urokinase plasminogen activator surface receptor (uPAR), Homo sapiens Urokinase-type plasminogen activator (uPA), Homo sapiens 3BT2 Q8RS40 Beta-1,3-xylanase (txyA), Alcaligenes sp.
Publication Year: 2014
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