Primary Citation PubMed: 15299531
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SPROUTS: a database for the evaluation of protein stability upon point mutation.
(2009) Nucleic Acids Res 37
PubMed: 18945702 | PubMedCentral: PMC2686433 | DOI: 10.1093/nar/gkn704
The example of a ribonuclease from Streptomyces aureofaciens (PDB code: 1gmp) illustrates this case.
Positions of minima of stability score for DFIRE and I-Mutant, MIR prediction, TEF assignment and solvent accessibility for the ribonuclease from S. aureofaciens (PDB code: 1gmp) Position and related information DFIRE 7 20 28 37 44 52 56 71 81 86 92 I-Mutant 7 11 22 27 35 44 52 56 60 71 82 93 Consensus 7 11 21 27.5 36 44 52 56 60 – 71 81.5 86 92.5 92.5 – MIR 8 22 36 57 58 70 71 86 91 92 96 Delta pos.
Query interface of SPROUTS with 1gmp as selected structure and default options.
The lower window contains a view of the 1gmp structure with the Jmol applet.
The lower window in Figure 2 shows an example of the 3D applet with the 1gmp structure.
The query process consists in selecting the 1gmp structure in the PDB code field and using the default options as illustrated in Figure 1 .
Publication Year: 2009
Sequence and structural analysis of the Asp-box motif and Asp-box beta-propellers; a widespread propeller-type characteristic of the Vps10 domain family and several glycoside hydrolase families.
(2009) BMC Struct Biol 9
PubMed: 19594936 | PubMedCentral: PMC2716378 | DOI: 10.1186/1472-6807-9-46
C. RNase Sa in complex with GMP ( 1gmp ).
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