Primary Citation PubMed: 11889032
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Hierarchical structure controls nanomechanical properties of vimentin intermediate filaments.
(2009) PLoS One 4
PubMed: 19806221 | PubMedCentral: PMC2752800 | DOI: 10.1371/journal.pone.0007294
So far, only parts of two of the four segments, a section of the 1A and 2B domain of the vimentin dimer structure, have been crystallized and their atomic structure identified based on x-ray diffracti... n experiments  ,  ,  ,  (the structures are found in Protein Data Bank (PDB) entries 1gk4, 1gk6 and 1gk7).
Furthermore, we compare the radial distribution function of our model with the existing segments obtained from x-ray diffraction (PDB entries 1gk7 for the 1A segment and 1gk4 for the 2B segment), showing good agreement as depicted in Fig.
Publication Year: 2009
Whole-exome sequencing to identify a novel LMNA gene mutation associated with inherited cardiac conduction disease.
(2013) PLoS One 8
PubMed: 24349489 | PubMedCentral: PMC3861486 | DOI: 10.1371/journal.pone.0083322
LMNA wild-type/mutation Structural Modeling Homology detection and structural prediction by HMM-HMM comparison (HHpred) [ 18 ] was employed to build the structural models of wild-type (WT) and Gly232V... l lamin A/C ( LMNA ) based on the crystal structures of intermediate filaments (tropomyosin from Sus scrofa , PDB ID: 1C1G [ 19 ]; human lamin coil 2B, PDB ID: 1X8Y [ 20 ]; human vimentin coil 2B fragment, PDB ID: 1GK4 [ 21 ] and human vimentin coil 2 fragment, PDB ID: 3TRT [ 22 ]).
To accomplish this, we utilized HHpred to search for the structures with the highest sequence identity across this region: tropomyosin from Sus scrofa (PDB ID: 1C1G) [ 19 ], human lamin coil 2B (PDB ID: 1X8Y) [ 20 ], human vimentin coil 2B fragment (PDB ID: 1GK4) [ 21 ] and human vimentin coil 2 fragment (PDB ID: 3TRT) [ 22 ].
Publication Year: 2013
Two desmin gene mutations associated with myofibrillar myopathies in Polish families.
(2014) PLoS One 9
PubMed: 25541946 | PubMedCentral: PMC4277352 | DOI: 10.1371/journal.pone.0115470
Molecular modelling The structure of desmin dimer (residues 333–411) was built using homology modelling tools (Swiss-Model server)  based on the structure of human vimentin coiled-coil 2B ... imeric fragment (residues 328–406) deposited in the Protein Data Bank (id: 1GK4)  .
Publication Year: 2014
PubMed ID is not available.
Published in 2015
pdb [ 35 ] and 1GK4.
Publication Year: 2015
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