Citations in PubMed

Primary Citation PubMed: 11335721 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 3

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Selective anticancer activity of a hexapeptide with sequence homology to a non-kinase domain of Cyclin Dependent Kinase 4.

(2011) Mol Cancer 10

PubMed: 21668989 | PubMedCentral: PMC3126777 | DOI: 10.1186/1476-4598-10-72

modelled from 1GII (CDK2) Threading score 165.6 158.2 151.0 128.8 99.7 Molecular mechanics energy (kJ mol -1 ) -12203.3 -12526.1 -12182.5 -11900.3 -11795.5 RMS deviation from 1BLX (in Å) 0.48 ... .88 0.62 0.67 0.65 Structure Z-scores, positive is better than average 2 nd generation packing quality -1.093 -0.868 -0.964 -1.090 -1.228 Ramachandran plot appearance -2.573 -3.374 -2.837 -2.965 -3.104 χ -1/ χ -2 rotamer quality -1.148 -1.470 -1.340 -0.955 -0.968 Backbone conformation -6.485 -5.201 -5.637 -7.016 -7.564 RMS Z-scores,should be close to 1 Bond lengths 0.655 0.645 0.652 0.657 0.668 Bond angles 1.187 1.176 1.183 1.168 1.181 Omega angle restraints 1.354 1.159 1.413 1.478 1.396 Side chain planarity 1.608 1.667 1.494 1.277 1.292 Improper dihedral distribution 0.883 0.882 0.907 0.879 0.865 Inside/Outside distribution 1.019 1.038 1.025 1.043 1.051 A high threading score indicates a better fit of the sequence in the structure.

Publication Year: 2011


Applying ligands profiling using multiple extended electron distribution based field templates and feature trees similarity searching in the discovery of new generation of urea-based antineoplastic kinase inhibitors.

(2012) PLoS One 7

PubMed: 23185312 | PubMedCentral: PMC3502486 | DOI: 10.1371/journal.pone.0049284

g004 Figure 4 Human cyclin dependent kinase 2 complexed with urea-based cdk4 kinase inhibitor (1GII): (A)The complex illustrated using the color codes that represent the different regions of the bindi... g site: G-loop, Hyd1, alphaC, Hinge, HRD and DFG regions.

Publication Year: 2012


PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4493148

PDB ID Resolution (Å) 1GZ8 1.30 1JVP 1.53 1H00 1.60 1OIT 1.60 1URW 1.60 1H01 1.79 1H08 1.80 1E1X 1.85 1H07 1.85 1H0V 1.90 1OIR 1.91 1E1V 1.95 1PXI 1.95 1JSV 1.96 1PXO 1.96 1AQ1 2.00 1GII 2.00 ... KE6 2.00 1KE7 2.00 1KE8 2.00 1KE9 2.00 1PYE 2.00 1R78 2.00 1CKP 2.05 1DM2 2.10 1H0W 2.10 1DI8 2.20 1FVT 2.20 1GIJ 2.20 1KE5 2.20 1W0X 2.20 1VYZ 2.21 1PXJ 2.30 1PXP 2.30 1OIQ 2.31 1V1K 2.31 1P2A 2.50 1PXL 2.50 1PXN 2.50 1PF8 2.51 1PXM 2.53 1G5S 2.61 1GIH 2.80 1PXK 2.80 The final score used to rank compounds was purposely designed to be the average score across these 44 structures of CDK2 so as to account for structural variability.

Publication Year: 2015