Citations in PubMed

Primary Citation PubMed: 11170644 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 2

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

  • 3 per page
  • 5 per page
  • 10 per page
  • view all
  • Publication Year
  • Ascending
  • Descending

Integration of ligand-based drug screening with structure-based drug screening by combining maximum volume overlapping score with ligand docking.

(2012) Pharmaceuticals (Basel) 5

PubMed: 24281339 | PubMedCentral: PMC3816669 | DOI: 10.3390/ph5121332

The target proteins were the macrophage migration inhibitory factor (PDB code: 1gcz), COX-2 (PDB code: 1cx2, 1pxx, 3pgh, 4cox and 6cox), HIV protease-1 (PDB code: 1aid, 1hpx and 1ivp), thermolysin (PD... code: 1tmn, 2tmn, 1tlp), and GST (PDB code: 18gs, 2gss, and 3pgt), and carboxypeptidase A (PDB code: 1cbx, 1cps, 3cpa).

Publication Year: 2012

A network pharmacology approach to understanding the mechanisms of action of traditional medicine: Bushenhuoxue formula for treatment of chronic kidney disease.

(2014) PLoS One 9

PubMed: 24598793 | PubMedCentral: PMC3943740 | DOI: 10.1371/journal.pone.0089123

Protein Targets Name Gene Symbol PDB-ID Positive Drugs Cutoff Value No a Known target proteins Carbonic anhydrase II CA2 1BN3 Topiramate −8.4 10 Raf kinase RAF1 1C1Y Sorafenib −9.6 12 ... acrophage migration inhibitory factor MIF 1GCZ ethyl 7-hydroxy-2-oxochromene-3-carboxylate −8.9 10 Hepatocyte growth factor HGF 1GMO N,O6-Disulfo-Glucosamine −7 79 Hypoxia-inducible factor 1α HIF1A 1H2K Everolimus −6.3 66 Soluble epoxide hydrolase EPHX2 1ZD3 4-{[(cyclohexylamino)carbonyl]amino} butanoic acid −7.4 15 Carbonic anhydrase XII CA12 1JD0 Hydrochlorothiazide −6.9 26 Peroxisome proliferator-activated receptor PPARG 1K74 Fenofibrate −9.4 39 Angiotensin converting enzyme ACE 1O86 Candoxatril −9 74 Monoamine oxidase B MAOB 1OJ9 Pargyline −9.2 39 Mitogen-activated protein kinase 1 MAPK1 1PME 4-[4-(4-fluorophenyl)-2-[4-[(S)-methylsulfinyl]phenyl]-1H-imidazol-5-yl] pyridine −9.4 27 Mast stem cell growth factor receptor KIT 1T46 Sorafenib −10.1 34 Thymidine phosphorylase TYMP 1UOU Chloro-6-[(2-Iminopyrrolidin-1-Yl)Methyl]Pyrimidine-2,4(1 h,3 h)-Dione −7.7 76 Macrophage metalloelastase MMP12 1UTT (6R)-4-benzyl-6-(1-methyl-2,2-dioxido-1,3-dihydro-2,1-benzisothiazol-5-yl)morpholin-3-one −10.6 6 β2 adrenergic receptor ADRB2 3D4S Carvedilol −9.3 45 Adenosine A2α receptor ADORA2A 3EML Mefloquine −9.8 71 C-C chemokine receptor type 1 CCR1 1Y5D Maraviroc −8.2 35 Mitogen-activated protein kinase 14 MAPK14 1ZZ2 N-[(3z)-5-Tert-Butyl-2-Phenyl-1,2-Dihydro-3h-Pyrazol-3-Ylidene]-N ′ -(4-Chlorophenyl)Urea −8.4 14 Lymphocyte function-associated antigen ITGAL 1CQP Lovastatin −7.2 0 Vasopressin V1α receptor AVPR1A 1YTV Conivaptan −10.5 20 Placeta growth factor PGF 1FZV Suplatast tosylate −5 25 Transforming growth factor beta 1 TGFB1 1KLD NO ligand Tumor necrosis factor ligand superfamily member 5 TNFSF5 1I9R NO ligand Nuclear factor NF-κB NFKB1 1NFI NO ligand Carbonic anhydrase IV CA4 1ZNC NO ligand C-C motif chemokine-2 CCL2/MCP1 2BDN NO ligand DNA-directed RNA polymerase II 19 kDa polypeptide POLR2D 2C35 NO ligand Carbonic anhydrase IX CA9 2HKF NO ligand Known target proteins Plasminogen activator inhibitor-1 SERPINE1 1OC0 NO ligand RAC-α serine/threonine kinase No symbol 1AO2 NO ligand Protein-glutamine γ-glutamyltransferase TGM2 2Q3Z NO ligand Putative targets Tyrosine-protein kinase BTK BTK 3OCS Staurosporine −9.6 53 Small inducible cytokine A5 CCL5 1U4M Heparin_Disaccharide_I-S −6 15 Epidermal growth factor receptor EGFR 2GS7 Flavopiridol −9 19 Estrogen receptor ESR1 3Q97 Estradiol −10 1 Heat shock cognate 71 kDa protein HSPA8 3FZK (2R,3R,4S,5R)-2-[6-amino-8-[(3,4-dichlorophenyl)methylamino]purin-9-yl]-5-(hydroxymethyl)oxolane-3,4-diol −8.2 34 Insulin receptor INSR 2HR7 Hydrochloride) −9.5 21 Proto-oncogene tyrosine-protein kinase LCK LCK 3AC1 N-(2-chloro-6-methylphenyl)-8-[(3S)-3-methylpiperazin-1-yl]imidazo[1,5-a]quinoxalin-4-amine −8.2 60 Hepatocyte nuclear factor 4-alpha HNF4A 1PZL 1_methyl_2-nitro_benzo[e]benzofuran −7.4 79 Glucocorticoid receptor NR3C1 3K22 Flunisolide −10 26 Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform PIK3CA 3HHM Wortmannin −9.1 20 Plasminogen activator, tissue PLAT 1A5H Iloprost −8.5 87 Acyl-CoA dehydrogenase family member 8, mitochondrial ACTN1 1RX0 Methacrylyl-Coenzyme_A −9 16 Protein tyrosine phosphatase PTPN1 1BZH (Oxalyl-Amino)-Naphthalene-2-Carboxylic_Acid −8 19 Protein kinase C, beta PRKCB 2I0E Vitamin_E −9.7 13 E3 ubiquitin protein ligase VHL 3ZRC 4-((naphthalen-2-ylamino)methyl)benzene-1,2-diol −7.7 21 FYN oncogene related to SRC, FGR, YES FYN 1AOT 2,5,8,11-Tetraoxadodecane −6.6 29 9-mer from C-C chemokine receptor type 5 CCR5 2RLL NO ligand Fc fragment of IgG, low affinity IIb, receptor (CD32) FCGR2B 2FCB NO ligand Fibronectin 1 FN1 3MQL NO ligand Myeloma immunoglobulin D lambda IGHG1 1ZVO NO ligand Solute carrier family 4 SLC4A1 1BTT NO ligand Signal transducer and activator of transcription STAT1 1BF5 NO ligand Jun proto-oncogene JUN 1FOS NO ligand KIAA0101 KIAA0101 No PDB data Catechol-O-methyltransferase COMT No PDB data Protein Targets Name Gene Symbol PDB-ID Positive Drugs Cutoff Value No Putative targets Decorin DCN No PDB data Clusterin CLU No PDB data Transforming growth factor, beta receptor 1 TGFBR1 No PDB data Interleukin 8 IL8 No PDB data Apolipoprotein A–I APOA1 No PDB data Signal transducer and activator of transcription 5B STAT5B No PDB data No a : The number of effective molecular docking.

Publication Year: 2014