Citations in PubMed

Primary Citation PubMed: 11092894 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 6

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Two frequenins in Drosophila: unveiling the evolutionary history of an unusual neuronal calcium sensor (NCS) duplication.

(2010) BMC Evol Biol 10

PubMed: 20170488 | PubMedCentral: PMC2837045 | DOI: 10.1186/1471-2148-10-54

The 3D structure of human Frequenin (PDB ID: 1G8I ) [ 74 , 75 ] was used as template for this analysis.

Publication Year: 2010

Characterisation of the interaction of the C-terminus of the dopamine D2 receptor with neuronal calcium sensor-1.

(2011) PLoS One 6

PubMed: 22114693 | PubMedCentral: PMC3218054 | DOI: 10.1371/journal.pone.0027779

The secondary structure elements indicated are obtained from the crystal structure of human NCS-1 (1G8I).

When resonance perturbations are mapped onto the structure of NCS-1 (using Protein Data Bank structure 1G8I), the most affected ones are from residues located either in the hydrophobic ligand-binding crevice or in the regions linking the helical regions of the EF hands ( Figure 5 ).

This makes sense since in the crystal structure of NCS-1 (PDB accession number 1G8I), helix 11 occupies the C-terminal hydrophobic binding groove, effectively blocking any ligand interaction.

The orientation of the peptide in the C-terminal hydrophobic site corresponds with that observed for the Pik1 (residues 156–170) interaction with Frq1 [31] , and the way the C-terminus of NCS-1 and Frq-1 occupy this binding site in the structure of unliganded proteins (PDB accession 1G8I and 1FPW).

For these docking experiments, the known structures of the human NCS-1 (1G8I) with the coordinates for the extreme C-terminal removed and coordinates for the C-terminus peptide TFNIEFRKAFLKILSC of the D3 receptor (residues residues 385–400 from the crystal structure of the dopamine D3 receptor (PDB Accession 3PBL) were used.

Publication Year: 2011

Understanding the physiological roles of the neuronal calcium sensor proteins.

(2012) Mol Brain 5

PubMed: 22269068 | PubMedCentral: PMC3271974 | DOI: 10.1186/1756-6606-5-2

The structure of NCS-1 derived from PDB 1G8I [ 149 ] is shown in space-filling representation and the D2/D3 peptides in yellow.

Publication Year: 2012

The structure of neuronal calcium sensor-1 in solution revealed by molecular dynamics simulations.

(2013) PLoS One 8

PubMed: 24098643 | PubMedCentral: PMC3787052 | DOI: 10.1371/journal.pone.0074383

Supporting Information Figure S1 Comparison between the most representative MD-XR structure (light color) and the crystallographic structure 1G8I (dark color).

Materials and Methods NCS-1 structure In Figure 1A the cartoon representation of the crystallographic protein structure of unmyristoilated NCS-1 (PDB code 1G8I) [4] is shown.

One simulation started from the crystal structure [4] , chain B of the PDB 1G8I, after removing all crystallographic waters and residual chain glycols located in the HC.

(A) Crystallographic structure from PDB file 1G8I; (B) NMR structure, the first model that appears in the PDB file 2LCP.

Backbone RMSDs between the crystal structure (segment B of the PDB file 1G8I) and the solution structure (first structure in the PDB file 2LCP).

Publication Year: 2013

Structural and biochemical characterization of human PR70 in isolation and in complex with the scaffolding subunit of protein phosphatase 2A.

(2014) PLoS One 9

PubMed: 25007185 | PubMedCentral: PMC4090178 | DOI: 10.1371/journal.pone.0101846

PR70 Hits Z-score RMSD(Å) Aligned residues % Seq. identity CBLD1 KChIP1 (human) 9.3 4.8 141 16 UNP: Q9NZI2, PDB: 1S1E NCS-1 (human) 8.5 5.8 138 11 UNP: P62166, PDB: 1G8I Calcineurin B (human) ... .4 4.6 126 10 UNP: P63098, PDB: 2P6B Frequenin (S. cerevisiae) 8.3 6.3 137 15 UNP: P39104, PDB: 2JU0 CBL4 (A. thaliana) 8.2 4.5 117 10 UNP: O81223, PDB: 1V1F CBLD2 CBL2 (A. thaliana) 11.1 3.3 146 14 UNP: Q8LAS7, PDB: 1UHN Neurocalcin-δ (B. Taurus) 11.0 3.3 150 15 UNP: P61602, PDB: 1BJF CBL4 (A. thaliana) 10.7 3.9 147 19 UNP: O81223, PDB: 1V1F KChIP1 (human) 10.6 3.3 145 10 UNP: Q9NZI2, PDB: 1S1E Calcineurin B (human) 10.3 3.9 135 14 UNP: P63098, PDB: 2P6B EF-lobe 1 Calmodulin N-term (human) 8.0 2.4 66 14 UNP: P62158, PDB: 3UCY EF-lobe 2 Calcium-binding p22 (rat) 8.3 2.5 71 8 UNP: P61023, PDB: 2CT9 EF-lobe 3 CDC31p (S. cerevisiae) 9.0 1.8 65 20 UNP: P06704, PDB: 2DOQ EF-lobe 4 KChIP1 (human) 8.7 2.2 72 11 UNP: Q9NZI2, PDB: 2I2R For CBLD1 and 2, the five top scoring hits (highest Z-scores) are listed, while only the best match is listed for EF-lobe 1–4.

Publication Year: 2014

PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4513130

For the NCS-1·D2R complex, molecular replacement used the structure of human NCS-1 (human and rat NCS-1 have 99% sequence identity; PDB accession 1G8I ) and PHASER ( 31 ), as implemented from ... ithin PHENIX ( 32 ).

Publication Year: 2015