Citations in PubMed

Primary Citation PubMed: 10753109 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 3

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

  • 3 per page
  • 5 per page
  • 10 per page
  • view all
  • Publication Year
  • Ascending
  • Descending

Predicting RNA-binding sites from the protein structure based on electrostatics, evolution and geometry.

(2008) Nucleic Acids Res 36

PubMed: 18276647 | PubMedCentral: PMC2275128 | DOI: 10.1093/nar/gkn008

These correspond to the PDB chains 1m8x-A, 1fjg-K, 1fjg-T, 1g1x-B, 1mzp-A, 1sds-C, 1vq8-H, 1b23-P, 1c0a-A, 1f7u-A and 1q2r-A.

Publication Year: 2008


Dissecting protein-RNA recognition sites.

(2008) Nucleic Acids Res 36

PubMed: 18353859 | PubMedCentral: PMC2377425 | DOI: 10.1093/nar/gkn102

The protein–RNA data set A. Complexes with tRNA ( 21 )     1asy 1c0a 1f7u* 1ffy* 1gax 1h3e 1h4s 1j1u* 1n78* 1qf6 1qtq 1ser     1... tt 1u0b* 1vfg 2azx 2bte 2csx 2drb 2fk6 2fmt B. Ribosomal proteins ( 11 )     1dfu* 1f7y 1feu* 1g1x 1i6u 1mji 1mms 1mzp 1s03 1sds* 2hw8* C. Duplex RNA ( 17 )     1di2* 1e7k 1hq1* 1msw* 1ooa 1r3e* 1rpu 1si3 1wne 1yvp* 1zbi* 2az0     2ez6* 2f8s 2gjw 2hvy* 2ipy D. Single-stranded RNA ( 30 )     1a9n 1av6 1cvj 1g2e* 1jbs* 1jid* 1k8w* 1knz 1kq2 1lng* 1m5o* 1m8v     1m8w* 1n35 1wpu* 1wsu* 1zbh 1zh5* 2a8v 2anr* 2asb* 2b3j* 2bx2 2db3*     2f8k* 2g4b 2gic 2i82* 2ix1 2j0s* E. Miscellaneous ( 2 )     2bgg* 2bh2* Asterisk indicates PDB entry with resolution better than 2.4 Å.

Publication Year: 2008


Sequence dependent variations in RNA duplex are related to non-canonical hydrogen bond interactions in dinucleotide steps.

(2014) BMC Res Notes 7

PubMed: 24502340 | PubMedCentral: PMC3930292 | DOI: 10.1186/1756-0500-7-83

Table 1 List of PDB IDs of structures in free-RNA, bound-RNA and DNA dataset Dataset (n) PDB ID free-RNA (88) 157D, 1CSL, 1DQH, 1DUQ, 1EHZ, 1EVV, 1 F27, 1GID, 1HR2, 1I9X, 1KFO, 1KH6, 1L2X, 1LC... , 1MHK, 1NLC, 1NTB, 1NUJ, 1NYI, 1Q29, 1QC0, 1RNA, 1SDR, 1T0D, 1T0E, 1U8D, 1U9S, 1X9C, 1XJR, 1Y26, 1Y27, 1YFG, 1YZD, 1Z79, 1Z7F, 1ZCI, 1ZEV, 1ZFT, 1ZFV, 1ZFX, 1ZX7, 205D, 255D, 280D, 283D, 2A43, 2AO5, 2B57, 2D2K, 2D2L, 2ET5, 2FGP, 2FQN, 2G92, 2H1M, 2OE5, 2OE8, 2OEU, 2OIY, 2PN4, 2PWT, 2Q1O, 2Q1R, 2R20, 2Z75, 353D, 354D, 361D, 364D, 397D, 3B31, 3B4B, 3B5S, 3CJZ, 3CZW, 3D0X, 3D2V, 3DIL, 3DS7, 3FS0, 3FTM, 3GCA, 3GER, 406D, 413D, 420D, 430D, 433D bound-RNA (127) 1A9N, 1B23, 1DFU, 1DI2, 1E7K, 1EC6, 1EFW, 1F7V, 1F7Y, 1FEU, 1G1X, 1GAX, 1H3E, 1H4S, 1I6U, 1IL2, 1J1U, 1JID, 1K8W, 1LNG, 1M5O, 1MJI, 1MZP, 1 N35, 1OOA, 1Q2R, 1QA6, 1QF6, 1QRS, 1QU2, 1R3E, 1R9F, 1RPU, 1S03, 1S72, 1SER, 1TFW, 1U0B, 1URN, 1VFG, 1ZBH, 2ANN, 2AZ2, 2AZX, 2B3J, 2BGG, 2BH2, 2BTE, 2CSX, 2CV1, 2DLC, 2DR8, 2DU3, 2E9T, 2F8K, 2F8S, 2FMT, 2HW8, 2I82, 2NUG, 2NZ4, 2OZB, 2PJP, 2PXV, 2QUX, 2RFK, 2VPL, 2XD0, 2Y8Y, 2ZI0, 2ZJR, 2ZM5, 2ZZM, 3A6P, 3ADD, 3AKZ, 3 AM1, 3AMT, 3AVX, 3BSO, 3CUN, 3DH3, 3EGZ, 3EPH, 3EQT, 3FTF, 3HAX, 3HHN, 3HJW, 3IAB, 3KFU, 3KMQ, 3KS8, 3 L25, 3LRR, 3MOJ, 3MQK, 3NCU, 3NVI, 3OIN, 3OL8, 3OVA, 3QRP, 3R2D, 3R9X, 3RW6, 3SIU, 3SNP, 3TMI, 3TS2, 3UCZ, 3UMY, 3V2F, 3V7E, 3VJR, 4AL5, 4AQ7, 4ATO, 4AY2, 4ERD, 4FVU, 4GCW, 4GD2, 4GHA, 4GHL, 4HXH, 4IG8, DNA (76) 118D, 126D, 137D, 138D, 158D, 160D, 196D, 1D13, 1D23, 1D49, 1D56, 1D57, 1D79, 1D8G, 1 DC0, 1DNZ, 1DOU, 1EHV, 1EN3, 1EN9, 1ENN, 1IKK, 1 M77, 1P4Z, 1S23, 1SGS, 1SK5, 1VJ4, 1WQY, 1XJX, 1XJY, 1ZEX, 1ZEY, 1ZF0, 1ZF1, 1ZF5, 1ZF6, 1ZF7, 1ZF8, 1ZF9, 1ZFA, 1ZFB, 1ZFC, 1ZFF, 1ZFG, 220D, 221D, 240D, 243D, 260D, 2A7E, 2B1B, 2D94, 2D95, 307D, 317D, 348D, 349D, 368D, 369D, 370D, 371D, 395D, 396D, 399D, 414D, 423D, 431D, 441D, 463D, 476D, 477D, 5DNB, 7BNA, 9BNA, 9DNA The number of PDB structures included in each dataset is given within parenthesis.

Publication Year: 2014