Primary Citation PubMed: 11005854
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On the evolutionary conservation of hydrogen bonds made by buried polar amino acids: the hidden joists, braces and trusses of protein architecture.
(2010) BMC Evol Biol 10
PubMed: 20513243 | PubMedCentral: PMC2892493 | DOI: 10.1186/1471-2148-10-161
Examples of polar residues that form hydrogen bonds to an adjacent strand that extends further than its neighbour, including serines in B) the pancreatic ribonuclease family [PDB: 7rsa ] and C) the cy... lodextrin glycosyltransferases [PDB: 1qhp ], D) a threonine in the aldehyde oxide and xanthine dehydrogenases (domains 1&2) [PDB: 1fo4 ] and E) a cysteine in the papain family cysteine proteinase [PDB: 1mem ].
Publication Year: 2010
Different inhibitory potency of febuxostat towards mammalian and bacterial xanthine oxidoreductases: insight from molecular dynamics.
(2012) Sci Rep 2
PubMed: 22448318 | PubMedCentral: PMC3311054 | DOI: 10.1038/srep00331
To understand these results, we employed a protein-ligand docking algorithm, the LigandFit 21 module of Discovery Studio R 2.5 (Accelrys Inc., California), to predict the position of febuxostat in the... binding cavity of bXOR and Rc XOR, using the protein data bank (PDB) codes 1FO4 8 or 1JRO 4 , respectively.
Preparation of starting structures The coordinates for mammalian and bacterial xanthine oxidoreductases (XORs) were taken from Protein Data Bank (PDB) structures 1FO4 8 and 1JRO 4 , respectively.
All the structures were illustrated by PyMol from the protein data bank codes 1FO4 and 1JRO.
Publication Year: 2012
Mechanistic insights into xanthine oxidoreductase from development studies of candidate drugs to treat hyperuricemia and gout.
(2015) J Biol Inorg Chem 20
PubMed: 25501928 | PubMedCentral: PMC4334109 | DOI: 10.1007/s00775-014-1210-x
Salicylate, PDB:1FO4; oxipurinol, PDB:3BDJ; BOF-4272: data deposition in process; Febuxostat, PDB:1N5X.
Publication Year: 2015
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