Citations in PubMed

Primary Citation PubMed: 11027133 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 2

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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SmCL3, a gastrodermal cysteine protease of the human blood fluke Schistosoma mansoni.

(2009) PLoS Negl Trop Dis 3

PubMed: 19488406 | PubMedCentral: PMC2685030 | DOI: 10.1371/journal.pntd.0000449

In order to show the active site as a substrate would likely bind, views of the model were generated in Chimera [40] as follows: The template 1FH0, chain A, was aligned to the SmCL3 mo... el in Chimera using the Matchmaker tool.

The predicted residues in this pocket are identical to those in the 1FH0 template (cathepsin V) except for one residue which is Leu 216 in SmCL3 (colored light green) and Phe 69 in 1FH0.

Other important active site residues Gln 166 and Asn 337 aligned closely with the same corresponding residues in 1FH0 (not highlighted in the model).

The template was human cathepsin V complexed with vinyl sulfone inhibitor K11777 [32] , [33] , pdb ID 1FH0, (with identical chains A and B, solved to 1.6 Å resolution).

Publication Year: 2009


Adaptive evolution and divergence of SERPINB3: a young duplicate in great Apes.

(2014) PLoS One 9

PubMed: 25133778 | PubMedCentral: PMC4136820 | DOI: 10.1371/journal.pone.0104935

Protein modelling and docking The three-dimensional (3D) structures of SERPINB3 (2ZV6), CTSS (2FQ9), CTSL1 (2XU3), CTSL2 (1FH0), CTSLK (3KWZ), CTSG (1CGH) and CMA1 (4AG1) proteins were obtained from P... otein Data Base (PDB) ( http://www.rcsb.org ).

Publication Year: 2014