Primary Citation PubMed: 11027133
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SmCL3, a gastrodermal cysteine protease of the human blood fluke Schistosoma mansoni.
(2009) PLoS Negl Trop Dis 3
PubMed: 19488406 | PubMedCentral: PMC2685030 | DOI: 10.1371/journal.pntd.0000449
In order to show the active site as a substrate would likely bind, views of the model were generated in Chimera  as follows: The template 1FH0, chain A, was aligned to the SmCL3 mo... el in Chimera using the Matchmaker tool.
The predicted residues in this pocket are identical to those in the 1FH0 template (cathepsin V) except for one residue which is Leu 216 in SmCL3 (colored light green) and Phe 69 in 1FH0.
Other important active site residues Gln 166 and Asn 337 aligned closely with the same corresponding residues in 1FH0 (not highlighted in the model).
The template was human cathepsin V complexed with vinyl sulfone inhibitor K11777  ,  , pdb ID 1FH0, (with identical chains A and B, solved to 1.6 Å resolution).
Publication Year: 2009
Adaptive evolution and divergence of SERPINB3: a young duplicate in great Apes.
(2014) PLoS One 9
PubMed: 25133778 | PubMedCentral: PMC4136820 | DOI: 10.1371/journal.pone.0104935
Protein modelling and docking The three-dimensional (3D) structures of SERPINB3 (2ZV6), CTSS (2FQ9), CTSL1 (2XU3), CTSL2 (1FH0), CTSLK (3KWZ), CTSG (1CGH) and CMA1 (4AG1) proteins were obtained from P... otein Data Base (PDB) ( http://www.rcsb.org ).
Publication Year: 2014
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