Citations in PubMed

Primary Citation PubMed: 8634242 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 1

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

  • 3 per page
  • 5 per page
  • 10 per page
  • view all
  • Publication Year
  • Ascending
  • Descending

Recognizing protein-protein interfaces with empirical potentials and reduced amino acid alphabets.

(2007) BMC Bioinformatics 8

PubMed: 17662112 | PubMedCentral: PMC2034607 | DOI: 10.1186/1471-2105-8-270

1FBT : This structure illustrates the worst case.

Decoy energies as a function of the structural deviation from native for three complexes: 1AR0 (top), 1BJF (middle) and 1FBT (bottom), using the energy function with 20 amino acid classes.

To illustrate further the behavior of our energy functions, we consider the structures 1AR0 , 1BJF , and 1FBT , which represent three typical situations.

Finally, for 1AR0 , 1BJF , and 1FBT , Fig.

Native and decoy energy distributions for three complexes: 1AR0 (top), 1BJF (middle) and 1FBT (bottom), using the energy functions with two (left), six (middle), and 20 amino acid classes (right).

For 1FBT , the energy/structure correlation is fair, even though the native structure is not well-discriminated; the decoys that have a lower energy correspond to very different structures with a different, competing binding mode.

Publication Year: 2007