Primary Citation PubMed: 10893416
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Evidence of a double-lid movement in Pseudomonas aeruginosa lipase: insights from molecular dynamics simulations.
(2005) PLoS Comput Biol 1
PubMed: 16110344 | PubMedCentral: PMC1187864 | DOI: 10.1371/journal.pcbi.0010028
Accession Numbers The P. aeruginosa lipase PDB ( http://www.rcsb.org/pdb/ ) accession number is 1EX9, and the Uniprot ( http://www.ebi.ac.uk/swissprot/access.html ) accession number is P26876.
Publication Year: 2005
Application of a sensitive collection heuristic for very large protein families: evolutionary relationship between adipose triglyceride lipase (ATGL) and classic mammalian lipases.
(2006) BMC Bioinformatics 7
PubMed: 16551354 | PubMedCentral: PMC1435942 | DOI: 10.1186/1471-2105-7-164
We generated pairwise structural superposition of a set of 13 3D structures (set of 11 structures – 4TGL [ 22 ], 1JKM [ 23 ], 1TCB [ 24 ], 1EX9 [ 25 ], 1KU0 [ 26 ], 1N8S [ 27 ], 1VLQ (unpublis... ed), 1DIN [ 28 ], 1AUO [ 29 ], 1FJ2 [ 30 ], 1M33 [ 31 ] – from proteins obtained in the family-search using pancreatic lipase as the query, and a set of two structures – 1OXW [ 13 ], 1CJY [ 14 ] – from the ATGL-side).
Publication Year: 2006
Crystal structure of Proteus mirabilis lipase, a novel lipase from the Proteus/psychrophilic subfamily of lipase family I.1.
(2012) PLoS One 7
PubMed: 23300806 | PubMedCentral: PMC3530535 | DOI: 10.1371/journal.pone.0052890
The PML structure closely resembles the structure of the family I.1 PAL (1EX9, 42% sequence ID, 0.87 Å), as well as family I.2 lipases BGL (1CVL, 38% sequence ID, 1.05 Å) and BCL (1OIL... 38% sequence ID, 0.98 Å).
The Pseudomonas aeruginosa lipase (41% identity; PDBID 1EX9) was used as the search model with lid helix (PAL residues 112 to 154) omitted.
A ) Overlay of closed PML (blue), closed B. glumae (PDBID:1CVL), and open P. aeruginosa (PDBID:1EX9) lipases.
Publication Year: 2012
Improvement of biocatalysts for industrial and environmental purposes by saturation mutagenesis.
(2013) Biomolecules 3
PubMed: 24970191 | PubMedCentral: PMC4030971 | DOI: 10.3390/biom3040778
Figure 7 Scheme of the structure of P. aeruginosa lipase active site pocket (PDB: 1EX9) with the targeted sites (library A: Met16/Leu17 in red; library B: Leu118/Ile 121 in orange; library C: Leu131/V... l 135 in yellow; library D: Leu159/Leu162 in green; and library E: Leu231/Val 232 in cyan).
Publication Year: 2013
A unique mono- and diacylglycerol lipase from Penicillium cyclopium: heterologous expression, biochemical characterization and molecular basis for its substrate selectivity.
(2014) PLoS One 9
PubMed: 25051359 | PubMedCentral: PMC4106778 | DOI: 10.1371/journal.pone.0102040
Molecular Docking Simulation A triacylglycerol analogue, Rc-(Rp, Sp)-1,2-dioctylcarbamoyl-glycero-3-o-octylphosphonate, was extracted from the crystal structure of Pseudomonas aeruginosa lipase (PDB: ... EX9).
Publication Year: 2014
First co-expression of a lipase and its specific foldase obtained by metagenomics.
(2014) Microb Cell Fact 13
PubMed: 25510188 | PubMedCentral: PMC4305245 | DOI: 10.1186/s12934-014-0171-7
Additionally, the modeled LipG9 structure shows the lid subdomain, which is composed of four α-helices, in an open conformation that is similar to the open-lid conformations of the lipase stru... tures of B. cepacia (1OIL) and P. aeruginosa (1EX9) (Figure 4 , parts f and g).
LipG9 has sequence identities of 72% with the lipase from Pseudomonas aeruginosa (PDB:1EX9), 54% with the lipase from Burkholderia cepacia (PDB:1OIL) and 51% with the lipase from Burkholderia glumae (PDB:2ES4).
PubMed ID is not available.
Published in 2015
Construction of a Model in Complex with Substrate Analogue A 1,2- and 1,3-diacylglycerol analogues were extracted from the crystal structure of Pseudomonas aeruginosa lipase (PDB: 1EX9) by removing th... sn-3 or sn-2 respectively [ 35 ].
Publication Year: 2015
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