Citations in PubMed

Primary Citation PubMed: 10893416 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 7

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

  • 3 per page
  • 5 per page
  • 10 per page
  • view all
  • Publication Year
  • Ascending
  • Descending

Evidence of a double-lid movement in Pseudomonas aeruginosa lipase: insights from molecular dynamics simulations.

(2005) PLoS Comput Biol 1

PubMed: 16110344 | PubMedCentral: PMC1187864 | DOI: 10.1371/journal.pcbi.0010028

Accession Numbers The P. aeruginosa lipase PDB ( http://www.rcsb.org/pdb/ ) accession number is 1EX9, and the Uniprot ( http://www.ebi.ac.uk/swissprot/access.html ) accession number is P26876.

Publication Year: 2005


Application of a sensitive collection heuristic for very large protein families: evolutionary relationship between adipose triglyceride lipase (ATGL) and classic mammalian lipases.

(2006) BMC Bioinformatics 7

PubMed: 16551354 | PubMedCentral: PMC1435942 | DOI: 10.1186/1471-2105-7-164

We generated pairwise structural superposition of a set of 13 3D structures (set of 11 structures – 4TGL [ 22 ], 1JKM [ 23 ], 1TCB [ 24 ], 1EX9 [ 25 ], 1KU0 [ 26 ], 1N8S [ 27 ], 1VLQ (unpublis... ed), 1DIN [ 28 ], 1AUO [ 29 ], 1FJ2 [ 30 ], 1M33 [ 31 ] – from proteins obtained in the family-search using pancreatic lipase as the query, and a set of two structures – 1OXW [ 13 ], 1CJY [ 14 ] – from the ATGL-side).

Publication Year: 2006


Crystal structure of Proteus mirabilis lipase, a novel lipase from the Proteus/psychrophilic subfamily of lipase family I.1.

(2012) PLoS One 7

PubMed: 23300806 | PubMedCentral: PMC3530535 | DOI: 10.1371/journal.pone.0052890

The PML structure closely resembles the structure of the family I.1 PAL (1EX9, 42% sequence ID, 0.87 Å), as well as family I.2 lipases BGL (1CVL, 38% sequence ID, 1.05 Å) and BCL (1OIL... 38% sequence ID, 0.98 Å).

The Pseudomonas aeruginosa lipase (41% identity; PDBID 1EX9) was used as the search model with lid helix (PAL residues 112 to 154) omitted.

A ) Overlay of closed PML (blue), closed B. glumae (PDBID:1CVL), and open P. aeruginosa (PDBID:1EX9) lipases.

Publication Year: 2012


Improvement of biocatalysts for industrial and environmental purposes by saturation mutagenesis.

(2013) Biomolecules 3

PubMed: 24970191 | PubMedCentral: PMC4030971 | DOI: 10.3390/biom3040778

Figure 7 Scheme of the structure of P. aeruginosa lipase active site pocket (PDB: 1EX9) with the targeted sites (library A: Met16/Leu17 in red; library B: Leu118/Ile 121 in orange; library C: Leu131/V... l 135 in yellow; library D: Leu159/Leu162 in green; and library E: Leu231/Val 232 in cyan).

Publication Year: 2013


A unique mono- and diacylglycerol lipase from Penicillium cyclopium: heterologous expression, biochemical characterization and molecular basis for its substrate selectivity.

(2014) PLoS One 9

PubMed: 25051359 | PubMedCentral: PMC4106778 | DOI: 10.1371/journal.pone.0102040

Molecular Docking Simulation A triacylglycerol analogue, Rc-(Rp, Sp)-1,2-dioctylcarbamoyl-glycero-3-o-octylphosphonate, was extracted from the crystal structure of Pseudomonas aeruginosa lipase (PDB: ... EX9).

Publication Year: 2014


First co-expression of a lipase and its specific foldase obtained by metagenomics.

(2014) Microb Cell Fact 13

PubMed: 25510188 | PubMedCentral: PMC4305245 | DOI: 10.1186/s12934-014-0171-7

Additionally, the modeled LipG9 structure shows the lid subdomain, which is composed of four α-helices, in an open conformation that is similar to the open-lid conformations of the lipase stru... tures of B. cepacia (1OIL) and P. aeruginosa (1EX9) (Figure  4 , parts f and g).

LipG9 has sequence identities of 72% with the lipase from Pseudomonas aeruginosa (PDB:1EX9), 54% with the lipase from Burkholderia cepacia (PDB:1OIL) and 51% with the lipase from Burkholderia glumae (PDB:2ES4).

Publication Year: 2014


PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4394454

Construction of a Model in Complex with Substrate Analogue A 1,2- and 1,3-diacylglycerol analogues were extracted from the crystal structure of Pseudomonas aeruginosa lipase (PDB: 1EX9) by removing th... sn-3 or sn-2 respectively [ 35 ].

Publication Year: 2015