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NetCSSP: web application for predicting chameleon sequences and amyloid fibril formation.
(2009) Nucleic Acids Res 37
PubMed: 19468045 | PubMedCentral: PMC2703942 | DOI: 10.1093/nar/gkp351
Output of search of chameleon sequences with the highest non-native P(helix) and non-native P(β) values Sequence Secondary structure PDB Chain SCOP CSSP (for native structure) Non-native P(hel... x) Non-native P(β) Relative P(helix) Relative P(β) LRRARAA CCCCCCC 1cer O d.81.1.1 0.18 0.69 0.13 3.93 0.73 KQMLAKA CCCCCCC 1goj A c.37.1.9 0.13 0.68 0.18 5.10 1.33 QEQLEKA CCCCCCC 1gx5 A e.8.1.4 0.17 0.68 0.13 3.89 0.77 AKEAAQK CCCCCCC 1g9l A a.144.1.1 0.2 0.68 0.1 3.50 0.53 ARAQARQ CCCEEEE 1omh A d.89.1.5 0.14 0.68 – 4.77 – AVIVVFD CCCCCCC 1bgx T c.120.1.2 0.15 0.22 0.58 1.45 3.80 VTVTVFD CCCCCCC 1eu1 A b.52.2.2 0.3 0.12 0.57 0.41 1.88 VFEVNIR HHHHHHH 1nxc A a.102.2.1 0.23 – 0.57 – 2.52 VYWFTVE HHHCCCC 1toh – d.178.1.1 0.22 – 0.57 – 2.54 VYVVFSV CCCCCCC 1vho A c.56.5.4 0.16 0.23 0.57 1.45 3.52 By searching the fragment DB, one can quantitatively analyze non-native secondary structure propensities in comparison with native secondary structure patterns.
Publication Year: 2009
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