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Distinct nucleic acid interaction properties of HIV-1 nucleocapsid protein precursor NCp15 explain reduced viral infectivity.
(2014) Nucleic Acids Res 42
PubMed: 24813443 | PubMedCentral: PMC4066767 | DOI: 10.1093/nar/gku335
( C ) Chemical shift differences between NCp7 and NCp15 observed at 25-mM NaCl shown on the NCp7 structure (pdb: 1ESK).
Publication Year: 2014
Dynamics of linker residues modulate the nucleic acid binding properties of the HIV-1 nucleocapsid protein zinc fingers.
(2014) PLoS One 9
PubMed: 25029439 | PubMedCentral: PMC4100767 | DOI: 10.1371/journal.pone.0102150
Structure of NC (pdb 1esk) showing the positioning of the N17 side chain (in red) relatively to the linker, the different residues R29 to K33 are shown with their side chain in blue, K34 in green, G35... in yellow.
This folding is found in the two deposited structures (1mfs and 1esk) and is expected to modulate the properties of ZF1 relative to ZF2 explaining the non-symmetrical role of the linker in respect to the two ZFs as well as the differences in the motions of the two ZFs.
However, it was not necessary to build new structures taking into account these nOes as the existing structures (1mfs and 1esk) are in agreement with most of these nOes.
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