Primary Citation PubMed: 12836677
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NMR structure of the protein NP_247299.1: comparison with the crystal structure.
(2010) Acta Crystallogr Sect F Struct Biol Cryst Commun 66
PubMed: 20944234 | PubMedCentral: PMC2954228 | DOI: 10.1107/S1744309110005890
Superposition of the previously reported structures of six COG1433-family proteins [PDB codes 2re2 (Joint Center for Structural Genomics, unpublished work), 1rdu (Etezady-Esfarjani et al. , 2004 ... b6; ), 1o13 (Joint Center for Structural Genomics, unpublished work), 1t3v (Columbus et al. , 2005 ▶ ), 2yx6 (T. Hosaka, K. Murayama, T. Terada, M. Shirouzu & S. Yokoyama, unpublished work) and 1eo1 (Cort et al. , 2000 ▶ )] with NP_247299.1 confirmed high conservation of the relative spatial arrangement of the regular secondary structures, with any structure variations being limited to the connecting nonregular polypeptide segments, where they appear to correlate with amino-acid insertions and deletions.
Publication Year: 2010
Evaluating the solution from MrBUMP and BALBES.
(2011) Acta Crystallogr D Biol Crystallogr 67
PubMed: 21460449 | PubMedCentral: PMC3069746 | DOI: 10.1107/S0907444911007530
This is an ensemble example where the constituent search models ( 1rdu _ A , 1eo1 _ A , 1o13 _ A , 1t3v _ A ) in the ensemble failed to yield an acceptable solution on their own using Phaser t... perform the MR. The ensemble itself produced a ‘good’ solution.
Fig. 7 ▶ shows the structural alignment of the constituent search models (chains A of 1rdu , 1eo1 , 1o13 and 1t3v ) used to generate the ensemble search model for 2wfb .
Publication Year: 2011
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