Primary Citation PubMed: 9163431
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Evolutionary modeling of rate shifts reveals specificity determinants in HIV-1 subtypes.
(2008) PLoS Comput Biol 4
PubMed: 18989394 | PubMedCentral: PMC2566816 | DOI: 10.1371/journal.pcbi.1000214
Thus, the following structures were used: Gag derived proteins: matrix p17, capsid p24, nucleocapsid p7 (PDB IDs: 1tam, 1e6j, 1a1t, respectively); Pol derived proteins: protease p10, reverse transcrip... ase p51, RNase p15, integrase p31 (PDB IDs: 1aaq, 1rtd, 1o1w, 2itg, respectively); Vpr p12/p10 (PDB ID: 1m8l); Tat p16/p14 (PDB ID: 1mnb); Rev p19 (PDB ID: 1etf); Vpu p16 (PDB ID: 1vpu); Env derived proteins: gp120, gp41 (PDB IDs: 1gc1, 1env, respectively); Nef p27/p25 (PDB ID: 2nef).
Publication Year: 2008
HIV-1 fusion inhibitor peptides enfuvirtide and T-1249 interact with erythrocyte and lymphocyte membranes.
(2010) PLoS One 5
PubMed: 20352107 | PubMedCentral: PMC2843717 | DOI: 10.1371/journal.pone.0009830
A) Sequence alignment of enfuvirtide and T-1249 with native gp41 (PDB code: 1ENV), showing the pocket binding domain (PBD) in blue and the putative lipid binding domain (LBD) close to the membrane pro... imal region in red.
Publication Year: 2010
Structural basis of HIV-1 neutralization by affinity matured Fabs directed against the internal trimeric coiled-coil of gp41.
(2010) PLoS Pathog 6
PubMed: 21085615 | PubMedCentral: PMC2978731 | DOI: 10.1371/journal.ppat.1001182
Three sets of tryptophan side chains seen in 6-HB gp41 trimers, two X-ray structure, pdb codes 1AIK  and 1ENV  , and one NMR structure, pdb code 1QCE [10&... x0005d; ,  , are shown in white, blue and red sticks, respectively.
HIV-1 subtype C envelope characteristics associated with divergent rates of chronic disease progression.
(2010) Retrovirology 7
PubMed: 21050445 | PubMedCentral: PMC2992043 | DOI: 10.1186/1742-4690-7-92
Gp41 was modeled in SWISS-MODEL [ 37 ] using 1ENV .
The gp41 structure based on 1ENV .
Computer-Aided Approaches for Targeting HIVgp41.
(2012) Biology (Basel) 1
PubMed: 23730525 | PubMedCentral: PMC3666032 | DOI: 10.3390/biology1020311
Stabilized NHR Constructs Example Structure (PDB 1CE0): Summary of PDB Structures: 1 Chimeras with GCN4 (pII41N): 1ENV [ 40 ]; 1FAV [ 73 ].
Publication Year: 2012
Complexes of neutralizing and non-neutralizing affinity matured Fabs with a mimetic of the internal trimeric coiled-coil of HIV-1 gp41.
(2013) PLoS One 8
PubMed: 24244293 | PubMedCentral: PMC3820714 | DOI: 10.1371/journal.pone.0078187
To account for any potential impact of IZ on the structure of NHR trimer we also included in our comparisons the crystal structure of the 6-HB with a similar GCN4 sequence added to the N terminus ( [2... ] ; PDB code 1ENV).
The orientation of the N-trimer in the crystal structure of a six-helix bundle of gp41, shown in yellow (PDB code 1ENV, C-helices are shown in white) is used as a starting point.
(A) N-HR helices of the (Fab 8066) 3 /3-H complex (red), of the (Fab 8062) 3 /3-H complex (blue), of the 6-helix bundle of gp41 with a GCN4 zipper  : PDB code 1ENV (green), and of the 6-helix bundle of gp41  ; PDB code 1AIK (orange).
(B) Shifts in the positions of the side chains in the N-HR helices of the 3 Fab 8062/3-Hcomplex (blue) with respect to their counterparts in the (Fab 8066) 3 /3-H complex (red) and 6-helix bundle (1ENV, green) indicates a greater degree of twist around the 3-fold axis of symmetry of the trimer.
Publication Year: 2013
Development and immunological assessment of VLP-based immunogens exposing the membrane-proximal region of the HIV-1 gp41 protein.
(2014) J Biomed Sci 21
PubMed: 25160824 | PubMedCentral: PMC4256929 | DOI: 10.1186/s12929-014-0079-x
A molecular model of the ectodomain of a GCN4-gp41CTM fusion protein (comprising the GCN4 zipper domain and residues 1–50 of gp41 CHR) was built based on a solved structure of a GCN4-NHR fusio... protein (1ENV, residues 1 to 80, [ 19 ]).
Publication Year: 2014
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