Citations in PubMed

Primary Citation PubMed: 9163431 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 7

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Evolutionary modeling of rate shifts reveals specificity determinants in HIV-1 subtypes.

(2008) PLoS Comput Biol 4

PubMed: 18989394 | PubMedCentral: PMC2566816 | DOI: 10.1371/journal.pcbi.1000214

Thus, the following structures were used: Gag derived proteins: matrix p17, capsid p24, nucleocapsid p7 (PDB IDs: 1tam, 1e6j, 1a1t, respectively); Pol derived proteins: protease p10, reverse transcrip... ase p51, RNase p15, integrase p31 (PDB IDs: 1aaq, 1rtd, 1o1w, 2itg, respectively); Vpr p12/p10 (PDB ID: 1m8l); Tat p16/p14 (PDB ID: 1mnb); Rev p19 (PDB ID: 1etf); Vpu p16 (PDB ID: 1vpu); Env derived proteins: gp120, gp41 (PDB IDs: 1gc1, 1env, respectively); Nef p27/p25 (PDB ID: 2nef).

Publication Year: 2008


HIV-1 fusion inhibitor peptides enfuvirtide and T-1249 interact with erythrocyte and lymphocyte membranes.

(2010) PLoS One 5

PubMed: 20352107 | PubMedCentral: PMC2843717 | DOI: 10.1371/journal.pone.0009830

A) Sequence alignment of enfuvirtide and T-1249 with native gp41 (PDB code: 1ENV), showing the pocket binding domain (PBD) in blue and the putative lipid binding domain (LBD) close to the membrane pro... imal region in red.

Publication Year: 2010


Structural basis of HIV-1 neutralization by affinity matured Fabs directed against the internal trimeric coiled-coil of gp41.

(2010) PLoS Pathog 6

PubMed: 21085615 | PubMedCentral: PMC2978731 | DOI: 10.1371/journal.ppat.1001182

Three sets of tryptophan side chains seen in 6-HB gp41 trimers, two X-ray structure, pdb codes 1AIK [7] and 1ENV [8] , and one NMR structure, pdb code 1QCE [10&... x0005d; , [52] , are shown in white, blue and red sticks, respectively.

Publication Year: 2010


HIV-1 subtype C envelope characteristics associated with divergent rates of chronic disease progression.

(2010) Retrovirology 7

PubMed: 21050445 | PubMedCentral: PMC2992043 | DOI: 10.1186/1742-4690-7-92

Gp41 was modeled in SWISS-MODEL [ 37 ] using 1ENV .

The gp41 structure based on 1ENV .

Publication Year: 2010


Computer-Aided Approaches for Targeting HIVgp41.

(2012) Biology (Basel) 1

PubMed: 23730525 | PubMedCentral: PMC3666032 | DOI: 10.3390/biology1020311

Stabilized NHR Constructs Example Structure (PDB 1CE0): Summary of PDB Structures: 1 Chimeras with GCN4 (pII41N): 1ENV [ 40 ]; 1FAV [ 73 ].

Publication Year: 2012


Complexes of neutralizing and non-neutralizing affinity matured Fabs with a mimetic of the internal trimeric coiled-coil of HIV-1 gp41.

(2013) PLoS One 8

PubMed: 24244293 | PubMedCentral: PMC3820714 | DOI: 10.1371/journal.pone.0078187

To account for any potential impact of IZ on the structure of NHR trimer we also included in our comparisons the crystal structure of the 6-HB with a similar GCN4 sequence added to the N terminus ( [2... ] ; PDB code 1ENV).

The orientation of the N-trimer in the crystal structure of a six-helix bundle of gp41, shown in yellow (PDB code 1ENV, C-helices are shown in white) is used as a starting point.

(A) N-HR helices of the (Fab 8066) 3 /3-H complex (red), of the (Fab 8062) 3 /3-H complex (blue), of the 6-helix bundle of gp41 with a GCN4 zipper [25] : PDB code 1ENV (green), and of the 6-helix bundle of gp41 [24] ; PDB code 1AIK (orange).

(B) Shifts in the positions of the side chains in the N-HR helices of the 3 Fab 8062/3-Hcomplex (blue) with respect to their counterparts in the (Fab 8066) 3 /3-H complex (red) and 6-helix bundle (1ENV, green) indicates a greater degree of twist around the 3-fold axis of symmetry of the trimer.

Publication Year: 2013


Development and immunological assessment of VLP-based immunogens exposing the membrane-proximal region of the HIV-1 gp41 protein.

(2014) J Biomed Sci 21

PubMed: 25160824 | PubMedCentral: PMC4256929 | DOI: 10.1186/s12929-014-0079-x

A molecular model of the ectodomain of a GCN4-gp41CTM fusion protein (comprising the GCN4 zipper domain and residues 1–50 of gp41 CHR) was built based on a solved structure of a GCN4-NHR fusio... protein (1ENV, residues 1 to 80, [ 19 ]).

Publication Year: 2014