Citations in PubMed

Primary Citation PubMed: 7501025 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 3

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

  • 3 per page
  • 5 per page
  • 10 per page
  • view all
  • Publication Year
  • Ascending
  • Descending

Biophysical characterization and crystal structure of the Feline Immunodeficiency Virus p15 matrix protein.

(2013) Retrovirology 10

PubMed: 23800358 | PubMedCentral: PMC3706335 | DOI: 10.1186/1742-4690-10-64

The superimposition of the matrix proteins of FIV (red) with (A) HIV (PDB ID: 1HIW, blue), (B) SIV (PDB ID: 1ECW, green) and (C) EIAV (PDB ID: 1HEK, yellow) matrix proteins.

The structure of full-length p15 was determined by the molecular replacement method using the program MrBUMP [ 59 ] of the CCP4 program suite and the structure of SIV matrix protein (PDB ID: 1ECW) as the search model.

The phase problem was solved by molecular replacement using SIV p17 (PDB ID: 1ECW) as the search model [ 32 ].

The best structural homologues are the EIAV p15 protein (PDB ID: 1HEK), the HIV p17 protein (PDB ID: 1HIW) and the SIV p17 protein (PDB ID: 1ECW) with 21%, 18% and 11% of sequence identity with the FIV p15 protein.

Helices (squiggles along the sequence) of the crystal structures are shown for FIV p15 (this paper), EIAV p15 (PDB ID: 1HEK), HIV p17 (PDB ID: 1HIW) and SIV p17 (PDB ID: 1ECW).

Table 2 Structural comparisons with other lentiviral matrix proteins Protein PDB ID RMSD 1 N align 2 %seq 3 EIAV MA 1HEK 2.5 Å 99 17 HIV MA 1HIW 1.9 Å 101 18 SIV MA 1ECW 2.1 Å 105 15 1 Root Mean Square Deviation calculated between Cα-atoms of matched residues.

Publication Year: 2013

The roles of lipids and nucleic acids in HIV-1 assembly.

(2014) Front Microbiol 5

PubMed: 24917853 | PubMedCentral: PMC4042026 | DOI: 10.3389/fmicb.2014.00253

The PDB files for each matrix protein are as follows: HIV-1 (1UPH), HIV-2 (2K4H), SIV (1ECW), EIAV (1HEK), RSV (1A6S), MPMV (1BAX), MLV (1MN8), HTLV-2 (1JVR).

Publication Year: 2014

PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4452903

FIV myrMA Q5A/G6S also bears close similarity to SIV MA (PDB: 1ECW) and EIAV MA (PDB: 1HEK), although EIAV is not N-terminally myristylated.

Publication Year: 2015