Primary Citation PubMed: 11373617
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Surface properties of Helicobacter pylori urease complex are essential for persistence.
(2010) PLoS One 5
PubMed: 21124783 | PubMedCentral: PMC2993952 | DOI: 10.1371/journal.pone.0015042
Alignment of H. pylori UreB (sp|P69996) at the region of site 8, for which the crystal structure has been determined (PDBe Entry: 1e9y), and ureases from different species.
Structural Biology In order to predict sites in urease which were tolerant to epitope insertion, the three-dimensional structure of the H. pylori urease complex was reconstructed from deposited coordinates (PDB-id: 1e9y) by applying the crystallographic symmetry operators.
Publication Year: 2010
CLICK--topology-independent comparison of biomolecular 3D structures.
(2011) Nucleic Acids Res 39
PubMed: 21602266 | PubMedCentral: PMC3125785 | DOI: 10.1093/nar/gkr393
Chains A and B of 1UBP superimpose onto chain A of 1E9Y, and chain C of 1UBP superimposes onto chain B of 1E9Y.
(ii) An alignment between two protein structures (1UBP chains A, B and C; and 1E9Y chains A and B) with multiple chains.
Publication Year: 2011
Structural analysis of hypothetical proteins from Helicobacter pylori: an approach to estimate functions of unknown or hypothetical proteins.
(2012) Int J Mol Sci 13
PubMed: 22837682 | PubMedCentral: PMC3397514 | DOI: 10.3390/ijms13067109
Urease subunit α and β ( A , pdb code: 1E9Y), Kat catalase ( B , pdb code: 1WQL) are multiple domain structures with multiple chains.
Publication Year: 2012
OpenStructure: an integrated software framework for computational structural biology.
(2013) Acta Crystallogr D Biol Crystallogr 69
PubMed: 23633579 | PubMedCentral: PMC3640466 | DOI: 10.1107/S0907444913007051
To investigate which cross-links are theoretically possible for this protein, we have built a homology model based on the X-ray structure of the urease from Helicobacter pylori (PDB entry 1e9y ; Ha et... al. , 2001 ▶ ), which shares 50% sequence identity.
Publication Year: 2013
Predicting copper-, iron-, and zinc-binding proteins in pathogenic species of the Paracoccidioides genus.
(2014) Front Microbiol 5
PubMed: 25620964 | PubMedCentral: PMC4288321 | DOI: 10.3389/fmicb.2014.00761
ureases present a higher identity with iron-binding enzymes (57%; PDB ID 3QGA) than with Ni-dependent enzymes (41%; PDB ID 1E9Y; data not shown).
Publication Year: 2014
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