Citations in PubMed

Primary Citation PubMed: 11373617 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 5

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Surface properties of Helicobacter pylori urease complex are essential for persistence.

(2010) PLoS One 5

PubMed: 21124783 | PubMedCentral: PMC2993952 | DOI: 10.1371/journal.pone.0015042

Alignment of H. pylori UreB (sp|P69996) at the region of site 8, for which the crystal structure has been determined (PDBe Entry: 1e9y), and ureases from different species.

Structural Biology In order to predict sites in urease which were tolerant to epitope insertion, the three-dimensional structure of the H. pylori urease complex was reconstructed from deposited coordinates (PDB-id: 1e9y) by applying the crystallographic symmetry operators.

Publication Year: 2010


CLICK--topology-independent comparison of biomolecular 3D structures.

(2011) Nucleic Acids Res 39

PubMed: 21602266 | PubMedCentral: PMC3125785 | DOI: 10.1093/nar/gkr393

Chains A and B of 1UBP superimpose onto chain A of 1E9Y, and chain C of 1UBP superimposes onto chain B of 1E9Y.

(ii) An alignment between two protein structures (1UBP chains A, B and C; and 1E9Y chains A and B) with multiple chains.

Publication Year: 2011


Structural analysis of hypothetical proteins from Helicobacter pylori: an approach to estimate functions of unknown or hypothetical proteins.

(2012) Int J Mol Sci 13

PubMed: 22837682 | PubMedCentral: PMC3397514 | DOI: 10.3390/ijms13067109

Urease subunit α and β ( A , pdb code: 1E9Y), Kat catalase ( B , pdb code: 1WQL) are multiple domain structures with multiple chains.

Publication Year: 2012


OpenStructure: an integrated software framework for computational structural biology.

(2013) Acta Crystallogr D Biol Crystallogr 69

PubMed: 23633579 | PubMedCentral: PMC3640466 | DOI: 10.1107/S0907444913007051

To investigate which cross-links are theoretically possible for this protein, we have built a homology model based on the X-ray structure of the urease from Helicobacter pylori (PDB entry 1e9y ; Ha et... al. , 2001 ▶ ), which shares 50% sequence identity.

Publication Year: 2013


Predicting copper-, iron-, and zinc-binding proteins in pathogenic species of the Paracoccidioides genus.

(2014) Front Microbiol 5

PubMed: 25620964 | PubMedCentral: PMC4288321 | DOI: 10.3389/fmicb.2014.00761

ureases present a higher identity with iron-binding enzymes (57%; PDB ID 3QGA) than with Ni-dependent enzymes (41%; PDB ID 1E9Y; data not shown).

Publication Year: 2014