Primary Citation PubMed: 11062563
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ProteinShader: illustrative rendering of macromolecules.
(2009) BMC Struct Biol 9
PubMed: 19331660 | PubMedCentral: PMC2672931 | DOI: 10.1186/1472-6807-9-19
PDB ID Residues Atoms Protein 1AQB 175 1574 retinol-binding protein 1BL8 388 2824 potassium channel 6ADH 748 5669 alcohol dehydrogenase 13PK 1660 12508 phosphoglycerate kinase 1E79 3315 25248 F1 ATPas... inhibited by DCCD 1AON 8015 59674 GroEL-GroES-(ADP)7 chaperonin complex The performance tests graphed in Figures 10 to 12 were made on a Macintosh 2.16 GHz Intel Core 2 Duo with 2 GB of RAM and an ATI Radeon X1600 graphics card with 256 MB VRAM.
Publication Year: 2009
Keep It Flexible: Driving Macromolecular Rotary Motions in Atomistic Simulations with GROMACS.
(2011) J Chem Theory Comput 7
PubMed: 21566696 | PubMedCentral: PMC3091370 | DOI: 10.1021/ct100666v
( 37 ) Simulation Setup The initial configuration of the F 1 motor was based on the X-ray structure of bovine F 1 -ATPase determined at 2.4 Å resolution( 39 ) (Protein Data Bank entry 1E79 ).
Publication Year: 2011
Common evolutionary origin for the rotor domain of rotary ATPases and flagellar protein export apparatus.
(2013) PLoS One 8
PubMed: 23724081 | PubMedCentral: PMC3665681 | DOI: 10.1371/journal.pone.0064695
For the γ subunit, both N- and C-terminal helices in the crystal structure (PDB: 1E79) are indicated by black lines.
( b ) Crystal structure of γ subunit from bovine F o F 1 (PDB: 1E79).
Publication Year: 2013
MORPH-PRO: a novel algorithm and web server for protein morphing.
(2013) Algorithms Mol Biol 8
PubMed: 23844614 | PubMedCentral: PMC3738870 | DOI: 10.1186/1748-7188-8-19
There are three conformations solved for the F1-ATPase molecular motor (PDB code: 1E79) which exhibit a subtle change.
PubMed ID is not available.
Published in 2015
The side-chain phenolic group of Tyr11 is in the center of a pocket formed by residues (based on the structure of the bovine F 1 ATPase, pdb: 1E79 [ 17 ]) Trp4, Ser10, Ile12, Arg13, Tyr14, and Ser15 o... the ε-subunit, Val57, Leu58, Ser79 and Gly80 of the δ-subunit, and Asn203 and Glu206 of the γ-subunit.
FIGURE 5 Relative location in the ATP synthase of residues mutated by known single nucleotide polymorphisms The structural representation is derived from the x-ray crystal structure of the bovine ATPase (1E79).
Publication Year: 2015
Structural Analysis Protein Data Bank (PDB) files 2YBB (supercomplex of I, III, and IV), 4HEA (complex I), 1PPJ (complex III), 1V54 (complex IV), and 1E79 with 1C17 (complex V) were rendered and color... d with the Visual Molecular Dynamics viewer 1.9.1 ( Humphrey et al. 1996 ).
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