Primary Citation PubMed: 10819965
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Structural motif screening reveals a novel, conserved carbohydrate-binding surface in the pathogenesis-related protein PR-5d.
(2010) BMC Struct Biol 10
PubMed: 20678238 | PubMedCentral: PMC2924342 | DOI: 10.1186/1472-6807-10-23
PDB ID 3hnm (a domain from a putative chitobiase) structurally aligned well with the CBM 22 xylan-binding domain (1dyo) according to VAST (E-value = 0.0453) [ 27 ], but has very a low sequence identit... (5.2%) to this protein.
Publication Year: 2010
Hydrophilic aromatic residue and in silico structure for carbohydrate binding module.
(2011) PLoS One 6
PubMed: 21966371 | PubMedCentral: PMC3178555 | DOI: 10.1371/journal.pone.0024814
The used template structures are 1pam  , 1d3c  , 1cyg ( N.A. ), 1ac0  , 1dyo  , 2j1v  and 2orz  .
Publication Year: 2011
Understanding how noncatalytic carbohydrate binding modules can display specificity for xyloglucan.
(2013) J Biol Chem 288
PubMed: 23229556 | PubMedCentral: PMC3576085 | DOI: 10.1074/jbc.M112.432781
Several other CBMs showed similar levels of structural similarity with CBM65A, including CBM22 (PDB 1DYO ) and CBM15 (PDB 1GNY ).
Publication Year: 2013
Fusion of a xylan-binding module to gluco-oligosaccharide oxidase increases activity and promotes stable immobilization.
(2014) PLoS One 9
PubMed: 24736604 | PubMedCentral: PMC3988151 | DOI: 10.1371/journal.pone.0095170
Ct CBM22A was chosen for this analysis since the binding affinity of this CBM has been characterized  and its structure has been solved (PDB ID: 1H6Y, 1DYO and 1H6X)  .
GOOX-VN was fused to C. thermocellum CBM22A (PDB ID: 1DYO) via a TP-rich linker.
Publication Year: 2014
Analysis of nidogen-1/laminin ?1 interaction by cross-linking, mass spectrometry, and computational modeling reveals multiple binding modes.
PubMed: 25387007 | PubMedCentral: PMC4227867 | DOI: 10.1371/journal.pone.0112886
ClustalW 2.1 alignments of the laminin γ1 L4 domain with all 13 templates identified by fold recognition (PDB entries 1GU3, 1GUI, 1K42, 1CX1, 1WKY, 1WMX, 3OEA, 2ZEW, 2ZEZ, 1DYO, 3F95, 3ZXJ, 1D... B) revealed sequence identities of 3–14%.
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