Primary Citation PubMed: 10742177
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Optimal identification of semi-rigid domains in macromolecules from molecular dynamics simulation.
(2010) PLoS One 5
PubMed: 20498702 | PubMedCentral: PMC2869351 | DOI: 10.1371/journal.pone.0010491
Due to in sequence mutations in the structures 1DVX and 1DVZ we cleaned up the structure files to leave only comparable -carbon atoms in all six pdb-files.
Besides the wild type structure (PDB code 1DVQ), which was also used in the molecular dynamics simulation, five related structures of transthyretin complexed with resveratrol, diclofenac, flurbiprofen, DDBF, oFLU, and PHENOX (PDB codes 1DVS, 1DVT, 1DVU, 1DVX, 1DVY, 1DVZ)  have been used to generate the distance deviation matrix.
Publication Year: 2010
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