Primary Citation PubMed: 10742177
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Optimal identification of semi-rigid domains in macromolecules from molecular dynamics simulation.
(2010) PLoS One 5
PubMed: 20498702 | PubMedCentral: PMC2869351 | DOI: 10.1371/journal.pone.0010491
MD trajectories of the wild type of transthyretin (PDB ID code, 1DVQ)  , containing solute atoms, and two point variants 58Arg, 58His, containing and solute atoms respectively.
Besides the wild type structure (PDB code 1DVQ), which was also used in the molecular dynamics simulation, five related structures of transthyretin complexed with resveratrol, diclofenac, flurbiprofen, DDBF, oFLU, and PHENOX (PDB codes 1DVS, 1DVT, 1DVU, 1DVX, 1DVY, 1DVZ)  have been used to generate the distance deviation matrix.
Publication Year: 2010
Crystallographic study of novel transthyretin ligands exhibiting negative-cooperativity between two thyroxine binding sites.
(2012) PLoS One 7
PubMed: 22973437 | PubMedCentral: PMC3433419 | DOI: 10.1371/journal.pone.0043522
The crystal structures of all complexes of wtTTR were determined by molecular replacement using the coordinates of native TTR (pdb code: 1DVQ).
From the X-ray structure of apo wt TTR (PDB ID: 1DVQ  ), chains A and B together, but without water molecules, ware used as an initial model for molecular replacement using the program PHASER  .
Publication Year: 2012
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