Primary Citation PubMed: 10678174
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The role of hydrophobic interactions in positioning of peripheral proteins in membranes.
(2007) BMC Struct Biol 7
PubMed: 17603894 | PubMedCentral: PMC1934363 | DOI: 10.1186/1472-6807-7-44
Protein Category Conformation 1 a Conformation 2 a PDB id Δ G calc D τ PDB id Δ G calc D τ Signal peptidase A.1 1kn9 -4.5 4.5 83 1t7d -5.9 3.7 66 Cytochrome P450 2b4 A.... 1po5 -6.9 9.7 39 2bdm -18.2 10.5 45 Cytochrome P450 2c5 A.1 1nr6 -11.6 12.5 54 1dt6 -8.4 7.5 17 Cytochrome P450 2c9 A.1 1og5 -13.6 7.5 74 1r9o -10.7 7.5 57 Cytochrome P450 3a4 A.1 1tqn -20.7 10.2 61 1w0f -15.2 6.2 68 Bile-salt activated lipase C.1 1aql -9.7 6.0 80 1akn -6.6 5.7 67 Triacylglycerol lipase C.1 1tib -3.3 1.9 42 1dt5 -4.8 2.9 84 Lipase/colipase complex C.1 1lpa -22.1 8.7 89 1lpb -26.2 10.3 87 Ganglioside GM2 activator C.2 1tjj -9.3 4.6 55 1pub -7.8 5.2 44 Phosducin/βγ complex C.3 1a0r -3.7 2.7 45 2trc -2.9 4.4 64 Tubby protein C.4 1c8z -4.2 6.2 87 1i7e -3.6 2.6 78 a All structures were solved by X-ray crystallography.
Publication Year: 2007
A novel 9-bp insertion detected in steroid 21-hydroxylase gene (CYP21A2): prediction of its structural and functional implications by computational methods.
(2009) J Biomed Sci 16
PubMed: 19272182 | PubMedCentral: PMC2653521 | DOI: 10.1186/1423-0127-16-3
Identification of suitable template Cytochrome P4502c5 of rabbit (PDB ID: 1DT6 ) was identified as the best template, for modeling the structure of human P450c21, by FUGUE (Z-score of 33.12; " certain... " with 99% confidence).
Sequence alignment of P4502c5 of rabbit (1DT6/1N6B) with human P450c21 generated by FUGUE server, along with their secondary structure information .
Publication Year: 2009
Molecular screening of the CYP4V2 gene in Bietti crystalline dystrophy that is associated with choroidal neovascularization.
(2011) Mol Vis 17
PubMed: 21850171 | PubMedCentral: PMC3154135 | DOI: null
The three-dimensional (3D) structure for human CYP4V2 is yet to be elucidated, hence the structure was modeled using mammalian CYP2C5 (PDB ID: 1DT6) and bacterial CYPBM3 (PDB ID: 2HPD) as templates an... using Modeler 9v7 (University of California, San Francisco, laboratory of Andrej Sali, University of California, San Francisco, CA), a molecular modeling suite [ 9 ].
Publication Year: 2011
The planetary biology of cytochrome P450 aromatases.
(2004) BMC Biol 2
PubMed: 15315709 | PubMedCentral: PMC515309 | DOI: 10.1186/1741-7007-2-19
A homology model of aromatase was built from progesterone 21-hydroxylase from rabbit liver (coordinates from PDB file 1DT6) [ 45 ], a homologous cytochrome P450-dependent monooxygenase.
Publication Year: 2004
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