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PDB ID Mentions in PubMed Central Article count: 2

Citations in PubMed

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PDB ID Mentions in PubMed Central

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Structural and functional characterization of HMG-COA reductase from Artemisia annua.

(2010) Bioinformation 5

PubMed: 21364776 | PubMedCentral: PMC3040474 | DOI: null

Therefore, 3‐D structure of AHM1 (566 amino acids) was generatedby using 1DQ8 as template by Swiss Model Server at expasy.org [ 13 , 14 , 31 ] and visualized by RASMOL [ 24 , 27 ].

The primary sequence of the initial 146 amino acid residues present at the N-terminus of the AHM1 do not showed any significant sequence homology to the template protein, Human HMGR (1DQ8) sequence deposited at the PDB data bank therefore, this fragment was excluded during the modeling.

Further, Clustral W analysis showed maximum identity of AHM1 protein with Human HMG‐COA reductase (PDB ID: 1DQ8), (sequence identity 56 %)[ 28 , 29 , 37 ].

Publication Year: 2010


PubMed ID is not available.

Published in 2014

PubMedCentral: PMC4170813

Table 1 Targets for SPLIF Benchmarking Collected from DUD-E class target description PDB actives a decoys a Gscore cutoff b refs kinase FAK1 focal adhesion kinase 1 3bz3 100 (71) 5350 ... 2131) –6.0 ( 9 ) (1mp8, 2etm, 2ijm, 3bz3, 4gu6, 4gu9, 4i4e, 4k8a, 4kab) AKT1 serine/threonine-protein kinase AKT 3cqw 293 (199) 16450 (6131) –5.0 ( 12 ) (3cqu, 3cqw, 3mv5, 3mvh, 3ocb, 3ow4, 3qkk, 3cql, 3qkm, 4ekk, 4ekl, 4gv1) protease ACE angiotensin-converting enzyme 3bkl 282 (277) 16900 (16454) –2.5 ( 13 ) (1o86, 1uze, 1uzf, 2c6n, 2oc2, 2xy9, 2xyd, 2ydm, 3bkk, 3bkl, 3l3n, 3nxq, 4bxk) TRYB1 tryptase beta-1 2zec 148 (59) 7650 (1657) –6.0 ( 5 ) (2f9p, 2f9n, 2zeb, 2zec, 4a6l) HMDH HMG-CoA reductase 3ccw 170 (170) 8750 (8456) –2.5 22 (1dq8, 1dq9, 1dqa, 1hw8, 1hw9, 1hwi, 1hwj, 1hwk, 1hwl, 2q1l, 2q6b, 2q6c, 2r4f, 3bgl, 3cct, 3ccw, 3ccz, 3cd0, 3cd5, 3cd7, 3cda, 3cdb) GPCR ADRB1 Beta-1 adrenergic receptor 2vt4 247 (240) 15842 (13932) –4.0 ( 14 ) (2vt4, 2y00, 2y01, 2y02, 2y03, 2y04, 2ycw, 2ycx, 2ycy, 2ycz, 3zpq, 3zpr, 4ami, 4amj) nuclear receptor MCR mineralocorticoid receptor 2aa2 94 (66) 5150 (2481) –6.0 ( 13 ) (2aa2, 1y9r, 1ya3, 2a3i, 2aa5, 2aa6, 2aa7, 2aax, 2ab2, 2abi, 2oax, 3vhu, 3vhv) PRGR progesterone receptor 3kba 293 (222) 15650 (12914) –5.0 ( 17 ) (1a28, 1e3k, 1sqn, 1sr7, 1zuc, 2ovh, 2ovm, 2w8y, 3d90, 3g8o, 3hq5, 3kba, 3zr7, 3zra, 3zrb, 4a2j, 4apu) ion channel GRIK1 glutamate receptor ionotropic kainate 1 1vso 101 (96) 6550 (5980) –2.5 ( 17 ) (1txf, 1vso, 1ycj, 2f34, 2f35, 2f36, 2pbw, 2qs1, 2qs2, 2qs3, 2qs4, 2wky, 3gba, 3gbb, 3s2v, 4dld, 4e0x) synthase PGH2 cyclooxygenase-2 3ln1 435 (374) 23150 (17948) –5.0 27 (1cvu, 1cx2, 1ddx, 1pxx, 3hs5, 3hs6, 3hs7, 3krk, 3ln0, 3ln1, 3mdl, 3nt1, 3ntb, 3ntg, 3olt, 3olu, 3pgh, 3q7d, 3qh0, 3qmq, 3rr3, 3tzi, 4cox, 4e1g, 4fm5, 4llz, 6cox) a Initial numbers of actives and decoys from DUD-E with the numbers after the Gscore filter included in parentheses.

Publication Year: 2014