Citations in PubMed

Primary Citation PubMed: 7552747 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 8

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Representing and comparing protein structures as paths in three-dimensional space.

(2006) BMC Bioinformatics 7

PubMed: 17052359 | PubMedCentral: PMC1626488 | DOI: 10.1186/1471-2105-7-460

(B) Stereo diagram of the structural superposition of 1dmo (colors) and 1osa (grey) generated by FATCAT.

Figure 6 Flexible alignment of different calmodulin structures: 1dmo (APO form) and 1osa (Ca-binding form) .

Publication Year: 2006


Elucidating the mechanisms of cooperative calcium-calmodulin interactions: a structural systems biology approach.

(2008) BMC Syst Biol 2

PubMed: 18518982 | PubMedCentral: PMC2435525 | DOI: 10.1186/1752-0509-2-48

The apo (1DMO [18]) (A) and Ca 2+ bound (1CLL [19]) (B) structures of the CaM protein illustrate Ca 2+ induced conformational transitions.

Publication Year: 2008


Hub promiscuity in protein-protein interaction networks.

(2010) Int J Mol Sci 11

PubMed: 20480050 | PubMedCentral: PMC2871146 | DOI: 10.3390/ijms11041930

( a ) NMR solution structure of Calmodulin showing the relative motion of one Ca 2+ binding domain (green) with respect to the other using the flexibility of the central disordered region (red) (PDB I... : 1DMO).

Publication Year: 2010


Analysis of protein-protein docking decoys using interaction fingerprints: application to the reconstruction of CaM-ligand complexes.

(2010) BMC Bioinformatics 11

PubMed: 20459766 | PubMedCentral: PMC2873953 | DOI: 10.1186/1471-2105-11-236

Dotted lines represent comparison of the NMR-derived structures ( 1DMO ) of 30 unbound states of CaM with the CaM structure extracted from the CaM-CNG complex ( 1SY9 ).

Structures of thirty unbound states of CaM (Figure 2D ) were obtained from the Protein Data Bank (PDB; PDBID: 1DMO , containing 30 NMR structures) [ 20 ].

Publication Year: 2010


Solution structure of the Apo C-terminal domain of the Lethocerus F1 troponin C isoform.

(2010) Biochemistry 49

PubMed: 20104876 | PubMedCentral: PMC3388720 | DOI: 10.1021/bi902094w

Table 2 Interhelical Angles in Representative EF-Hands a protein PDB entry method I−II II−III III−IV I−IV apo NCaM 1dmo NMR 128 ± 3 130 ±...  4 130 ± 4 121 ± 2 apo CCaM 1dmo NMR 137 ± 3 144 ± 3 132 ± 5 144 ± 3 apo skNTnC 1tnp NMR 130 ± 3 126 ± 5 125 ± 4 111 ± 2 apo cNTnC 1spy NMR 139 ± 3 115 ± 4 125 ± 5 117 ± 3 apo cNTnC 1a2x X-ray 138 119 136 121 holo cNTnC b 1ap4 NMR 136 ± 4 97 ± 4 119 ± 4 115 ± 2 apo F1 NTnC 2jnf NMR 133 ± 3 118 ± 2 124 ± 2 126 ± 3 apo F1 CTnC 2k2a NMR 135 ± 5 134 ± 4 132 ± 12 129 ± 7 holo F1 CTnC 2jnf NMR 103 ± 3 119 ± 2 127 ± 4 97 ± 2 holo NCaM 4cln X-ray 94 110 96 107 holo NCaM 1cll X-ray 87 112 96 99 holo NCaM 1g4y X-ray 96 111 90 115 holo NCaM 1cdl X-ray 88 112 91 104 holo CCaM 4cln X-ray 98 114 94 115 holo CCaM 1cll X-ray 97 112 95 109 apo CCaM c 1g4y X-ray 95 137 93 140 holo CCaM 1cdl X-ray 101 112 96 112 holo cCTnC 1a2x X-ray 99 120 109 112 holo cCTnC 1j1d X-ray 100 125 118 109 holo skNTnC 1tnq NMR 90 ± 3 100 ± 6 69 ± 5 109 ± 3 holo skNTnC 1ytz X-ray 105 101 94 116 apo skCTnC d 1yv0 X-ray 101 121 112 106 holo skCTnC 1ytz X-ray 106 123 111 114 apo CRLC e 1wdcB X-ray 103 146 104 144 apo CELC e 1wdcC X-ray 115 130 94 143 holo CAct e 1h8b NMR 96 ± 3 150 ± 4 93 ± 4 147 ± 3 a The values were calculated using the interhlx program freely available online ( http://nmr.uhnres.utoronto.ca/ikura/resources/data+sw/interhlx/ ).

Publication Year: 2010


Is buffer a good proxy for a crowded cell-like environment? A comparative NMR study of calmodulin side-chain dynamics in buffer and E. coli lysate.

(2012) PLoS One 7

PubMed: 23118958 | PubMedCentral: PMC3484071 | DOI: 10.1371/journal.pone.0048226

The structure of apoCaM is derived from PDB coordinates 1DMO [38] .

Publication Year: 2012


PubMed ID is not available.

Published in 2014

PubMedCentral: PMC4223872

Significantly, the conformation of the N- lobe of CaM in the Na v 1.5-CaM-Mg 2+ complex reported here is highly similar to that of N-lobe of apoCaM (pdb id 1DMO 18 ; Supplementary Fig. 1 ) as well as ... o the N-lobe-CaM-Mg 2+ complex (pdb id 3UCW; Supplementary Table 3 19 ) .

Publication Year: 2014


The structure and regulation of human muscle ?-actinin.

(2014) Cell 159

PubMed: 25433700 | PubMedCentral: PMC4259493 | DOI: 10.1016/j.cell.2014.10.056

On top from left to right: the open conformation of the N-terminal lobe from calmodulin (PDB code 1CDM ) ( Meador et al., 1993 ), the semi-open conformation from the C-terminal lobe of the myo... in essential light chain (PDB code 1SCM ) ( Xie et al., 1994 ) and the closed conformation from the calcium free C-terminal lobe of calmodulin (PDB code 1DMO ) ( Zhang et al., 1995 ).

Publication Year: 2014