Citations in PubMed

Primary Citation PubMed: 10882070 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 6

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Recognizing protein-protein interfaces with empirical potentials and reduced amino acid alphabets.

(2007) BMC Bioinformatics 8

PubMed: 17662112 | PubMedCentral: PMC2034607 | DOI: 10.1186/1471-2105-8-270

Blind heterodimer set a TS1, TS2 sets b PDB ID 20Cl Bastolla 6Cl PDB ID 20Cl Bastolla 6Cl 1ai7 1 1 1 1abr 4 2 3 1as4 1 1 1 1aui 1 1 1 1bpl 1 1 1 1ay7 3 3 2 1clv 2 1 2 1blx 3 6 3 1dj7 4 4 4 1c1y 3 4 3 ... dow 1 1 1 1dkf 2 47 1 1eud 8 9 7 1ugh 1 3 1 1f0c 1 1 1 1efv 1 1 1 1ksg 5 3 5 1ezq 1 1 1 1ku6 3 2 4 1f3v 67 145 36 1lot 1 1 1 1fle 19 4 9 1lpb 20 8 16 1hdm 1 1 1 1mhm 1 1 1 1itb 1 1 3 1mtp 1 1 1 1phn 1 1 1 1mzw 3 3 4 1qav 1 2 1 1npe 4 4 2 1smp 14 69 2 1nw9 1 10 1 1stf 2 5 1 1n52 10 1 9 D c 8/17 6/17 9/17 1o5m 3 1 2 D 3 13/17 9/17 15/17 1qge 1 1 1 1rke 1 1 1 1rtj 1 2 1 1ubt 1 2 1 4sgb 5 6 5 D c 13/24 13/24 13/24 D 3 17/24 18/24 16/24 Decoys constructed by other methods: Sternberg and Vakser decoys Limited series of protein–protein structures have been made available by Sternberg (ten series) and Vakser (five series) and coworkers, along with 99 high-quality decoys each.

Publication Year: 2007


Prognostic and therapeutic potential of nuclear receptors in head and neck squamous cell carcinomas.

(2009) J Oncol 2009

PubMed: 19794826 | PubMedCentral: PMC2753797 | DOI: 10.1155/2009/349205

Right panel: solid ribbon representation illustrating the LBD of the RAR/RXR heterodimer (PDB 1DKF) complexed with the ligands 9- cis -RA for RXR (PDB 3LBD) and ATRA for RAR (PDB 2LBD).

Publication Year: 2009


The "Phantom Effect" of the Rexinoid LG100754: structural and functional insights.

(2010) PLoS One 5

PubMed: 21152046 | PubMedCentral: PMC2994906 | DOI: 10.1371/journal.pone.0015119

Compared with the previous two RAR/RXR structures (PDB IDs are 1DKF and 1XDK), the overall structures are similar to each other except for H11 and H12.

The structure of the antagonist-bound heterodimer (PDB ID: 1DKF) was used as a starting model.

Publication Year: 2010


M-ORBIS: mapping of molecular binding sites and surfaces.

(2011) Nucleic Acids Res 39

PubMed: 20813758 | PubMedCentral: PMC3017595 | DOI: 10.1093/nar/gkq736

( A ) The TATA-binding protein (TBP) processed by the M-ORBIS Molecular Cartography approach starting from structure 1ais:A. ( B ) The Retinoid X Receptor-Alpha (RXR) cartography from the structure 1d... f:A. ( C ) The Pancreatic Alpha-Amylase (PAA) cartography from the structure 1dhk:A. Binding site types are represented in different colors: blue for homodimer, red for heterodimer, yellow for DNA, green for ligand and salmon for peptide.

For TBP and RXR, the homodimer partner shown is extracted from structures 1d3u and 1dkf, respectively.

Publication Year: 2011


Combinations of protein-chemical complex structures reveal new targets for established drugs.

(2011) PLoS Comput Biol 7

PubMed: 21573205 | PubMedCentral: PMC3088657 | DOI: 10.1371/journal.pcbi.1002043

(B): the complex of human fatty acid binding protein FABP3 with alitretinoin, built using complexes of FABP3 with stearic acid (PDB code 1HMR), mouse retinoic acid receptor RXRα with stearic a... id (PDB code 1DKF) and alitretinoin (PDB code 1XDK).

Publication Year: 2011


Chemical modulation of chaperone-mediated autophagy by retinoic acid derivatives.

(2013) Nat Chem Biol 9

PubMed: 23584676 | PubMedCentral: PMC3661710 | DOI: 10.1038/nchembio.1230

The structure of the RARα-RXR hetero-dimer in complex with the small molecule antagonist BM614 (PDB ID: 1DKF), was used for docking and molecular dynamics.

Publication Year: 2013