Citations in PubMed

Primary Citation PubMed: 3108513 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 1

Citations in PubMed

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PDB ID Mentions in PubMed Central

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Indirect readout in drug-DNA recognition: role of sequence-dependent DNA conformation.

(2008) Nucleic Acids Res 36

PubMed: 18039704 | PubMedCentral: PMC2241865 | DOI: 10.1093/nar/gkm892

Z-scores of the drug dataset and Z -scores of the available free PDB structures with the same DNA sequence as the drug-bound DNA Sequence Drug PDB Z PDB m Z m PDB M Z M N Z ave CCAATTGG Netropsin 1z8v... −2.85 431d −2.84 431d −2.84 1 −2.84 CCAGGCCTGG Imidazole-pyrrole 365d −2.68 1cw9 −3.16 1bd1 −1.77 5 −2.50 CGCATATTTGCG Tri-benzimidazole 459d −2.49 458d −2.00 458d −2.00 1 −2.00 CGCGAATTCGCG m -iodo Hoechst 443d −3.43 428d −4.18 270d −2.24 25 −3.33 CGCGAATTCGCG m -iodo Hoechst 449d −3.51 428d −4.18 270d −2.24 25 −3.33 CGCGAATTCGCG Benzimidazole 453d −3.65 428d −4.18 270d −2.24 25 −3.33 CGCGAATTCGCG Benzimidazole 1ftd −3.57 428d −4.18 270d −2.24 25 −3.33 CGCGAATTCGCG Benzimidazole 1qv4 −3.33 428d −4.18 270d −2.24 25 −3.33 CGCGAATTCGCG Thiophene diamidine 1vzk −3.67 428d −4.18 270d −2.24 25 −3.33 CGCGAATTCGCG Propamidine 1prp −3.54 428d −4.18 270d −2.24 25 −3.33 CGCGAATTCGCG Oxapentamidine 166d −3.52 428d −4.18 270d −2.24 25 −3.33 CGCGAATTCGCG Netropsin 6bna −3.86 428d −4.18 270d −2.24 25 −3.33 CGCGAATTCGCG Netropsin 101d −3.54 428d −4.18 270d −2.24 25 −3.33 GCGCGC Triostin 0dac −2.78 1d97 −1.69 1d97 −1.69 1 −1.69 GCGTACGC Quinoxaline 1pfe −3.97 253d −2.43 253d −2.43 1 −2.43 GCGTACGC Echinomycin 1xvk −2.88 253d −2.43 253d −2.43 1 −2.43 GTATATAC Netropsin 473d 1.63 446d 1.77 446d 1.77 1 1.77 Notes : The columns PDB and Z show the PDB file name of the DNA-drug complex and the respective Z -score value; PDB m and Z m give the PDB file name of the free B-DNA crystal structure and the Z -score with the minimum Z -score value; PDB M and Z M show the PDB file name and Z -score value of the free B-DNA crystal structure with the maximum Z -score.

Publication Year: 2008