Primary Citation PubMed: 10542097
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The second-shell metal ligands of human arginase affect coordination of the nucleophile and substrate.
(2010) Biochemistry 49
PubMed: 21053939 | PubMedCentral: PMC2998210 | DOI: 10.1021/bi101542t
Also, the structure of rat arginase I bound to the l -Arg analogue 2( S )-amino-6-boronohexanoic acid (Protein Data Bank entry 1D3V ) is consistent with coordination of a tetrahedral intermediate thro... gh M A ( 18 ).
Publication Year: 2010
Unique subunit packing in mycobacterial nanoRNase leads to alternate substrate recognitions in DHH phosphodiesterases.
(2014) Nucleic Acids Res 42
PubMed: 24878921 | PubMedCentral: PMC4081065 | DOI: 10.1093/nar/gku425
Accession codes of other PDB IDs analyzed: 1DJL, 1D3V, 1G5B, 3W5W, 3DMA, 3DEV, 1IR6, 2ZXP, 1I74 and 3G98.
Although Mn 2+ is generally present in an octahedral geometry with six-coordination state, the seven-coordination state (with a bidentate coordination with at least one residue) has been previously seen for Mn 2+ in several hydrolases (PDB ID: 1D3V) ( 28 ) and phosphatases (PDB ID: 1G5B) ( 29 ) in PDB.
Publication Year: 2014
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