Primary Citation PubMed: 8557026
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A phylogenomic profile of globins.
(2006) BMC Evol Biol 6
PubMed: 16600051 | PubMedCentral: PMC1457004 | DOI: 10.1186/1471-2148-6-31
The crystal structures of the P. aeruginosa (PDB: 1tu9 ) [ 56 ] and Vitreoscilla stercoraria (PDB: 2vhb ) [ 57 ], show them to be very similar to the globin domains of the FHbs from E. coli (PDB: 1gvh... ) [ 58 ] and Ralstonia (Alcaligenes) eutropha (PDB: 1cqx ) (59].
Publication Year: 2006
Structure of the first representative of Pfam family PF04016 (DUF364) reveals enolase and Rossmann-like folds that combine to form a unique active site with a possible role in heavy-metal chelation.
(2010) Acta Crystallogr Sect F Struct Biol Cryst Commun 66
PubMed: 20944207 | PubMedCentral: PMC2954201 | DOI: 10.1107/S1744309110007517
A search against a database of nonredundant cognate binding sites using IsoCleft (Najmanovich et al. , 2008 ▶ ), a graph-matching algorithm that searches for both geometrical and chemical comp... sition similarities, identified shared features between the Dhaf4260 cavity and the binding sites of proteins implicated in binding vitamin B 12 (B 12 -dependent glutamate mutase; PDB code 1ccw ; 40 atoms in common, Tanimoto similarity score 0.13, Z score 3.96, P -value 1.11 × 10 −2 ; Reitzer et al. , 1999 ▶ ), typical hemes (PDB code 2nap ; 37 atoms in common; Tanimoto similarity score 0.160, Z score 3.48, P -value 2.04 × 10 −2 ; Dias et al. , 1999 ▶ ), atypical hemes (PDB code 1q90 ; 37 atoms in common; Tanimoto similarity score 0.178, Z score 3.48, P -value 2.04 × 10 −2 ; Stroebel et al. , 2003 ▶ ), factor F430 (PDB code 1e6v ; 37 atoms in common; Tanimoto similarity score 0.151, Z score 3.48, P -value 2.04 × 10 −2 ; Grabarse et al. , 2000 ▶ ) and both heme and FAD (flavohemoglobin; PDB code 1cqx ; 36 atoms in common; Tanimoto similarity score 0.187, Z score 3.32, P -value 2.50 × 10 −2 ; Ermler et al. , 1995 ▶ ).
Publication Year: 2010
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