Primary Citation PubMed: 8218191
Citations in PubMed
This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.
Data mentions are occurrences of PDB IDs in the full text articles from the
PubMedCentral Open Access Subset
of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed.
Article titles can be filtered by keywords and sorted by year.
Predicting protein folding pathways at the mesoscopic level based on native interactions between secondary structure elements.
(2008) BMC Bioinformatics 9
PubMed: 18651953 | PubMedCentral: PMC2527578 | DOI: 10.1186/1471-2105-9-320
Figure 7 Folding pathway predictions for Staphylococcus aureus protein A domain B (PDB: 1BDD), leghemoglobin A (PDB: 1BIN), myoglobin (PDB: 1MBC), chymotrypsin inhibitor 2 structure 1 (PDB: 1COA), chy... otrypsin inhibitor 2 structure 2 (PDB: 2CI2), cardiotoxin III (PDB: 2CRT), and bovine pancreatic trypsin inhibitor BPTI (PDB: 6PTI).
There are two crystal structures for chymotrypsin inhibitor 2 (PDB: 1COA and 2CI2).
In our predictions, 1COA and 2CI2 have the same folding pathway, with the middle two β -strands interacting first, then the α -helix is added, followed by the C-terminal β -strand, and the N-terminal β -strand is added last.
Publication Year: 2008
Bluues: a program for the analysis of the electrostatic properties of proteins based on generalized Born radii.
(2012) BMC Bioinformatics 13 Suppl 4
PubMed: 22536964 | PubMedCentral: PMC3434445 | DOI: 10.1186/1471-2105-13-S4-S18
The test set includes pKa for structures with PDB id: 1a2p , 1a6k , 1beg , 1bf4 , 1bhc , 1bus , 1bvi , 1bvv , 1cdc , 1coa , 1cvo , 1de3 , 1dg9 , 1dwr , 1egf , 1gb1 , 1goa , 1h4g , 1ig5 , 1igc , 1kf3 ,... 1lni and 1lse .
Publication Year: 2012
RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics: Rutgers and UCSD/SDSC
RCSB PDB is a member of the
The RCSB PDB is funded by a grant (DBI-1338415) from the
National Science Foundation, the
National Institutes of Health, and the
US Department of Energy.