Citations in PubMed

Primary Citation PubMed: 8218191 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 2

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Predicting protein folding pathways at the mesoscopic level based on native interactions between secondary structure elements.

(2008) BMC Bioinformatics 9

PubMed: 18651953 | PubMedCentral: PMC2527578 | DOI: 10.1186/1471-2105-9-320

Figure 7 Folding pathway predictions for Staphylococcus aureus protein A domain B (PDB: 1BDD), leghemoglobin A (PDB: 1BIN), myoglobin (PDB: 1MBC), chymotrypsin inhibitor 2 structure 1 (PDB: 1COA), chy... otrypsin inhibitor 2 structure 2 (PDB: 2CI2), cardiotoxin III (PDB: 2CRT), and bovine pancreatic trypsin inhibitor BPTI (PDB: 6PTI).

There are two crystal structures for chymotrypsin inhibitor 2 (PDB: 1COA and 2CI2).

In our predictions, 1COA and 2CI2 have the same folding pathway, with the middle two β -strands interacting first, then the α -helix is added, followed by the C-terminal β -strand, and the N-terminal β -strand is added last.

Publication Year: 2008

Bluues: a program for the analysis of the electrostatic properties of proteins based on generalized Born radii.

(2012) BMC Bioinformatics 13 Suppl 4

PubMed: 22536964 | PubMedCentral: PMC3434445 | DOI: 10.1186/1471-2105-13-S4-S18

The test set includes pKa for structures with PDB id: 1a2p , 1a6k , 1beg , 1bf4 , 1bhc , 1bus , 1bvi , 1bvv , 1cdc , 1coa , 1cvo , 1de3 , 1dg9 , 1dwr , 1egf , 1gb1 , 1goa , 1h4g , 1ig5 , 1igc , 1kf3 ,... 1lni and 1lse .

Publication Year: 2012